LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g1559	ATGATAGTCCTCAATATGGAAGGAACACAACTAAATTTGGCATCAATATTTTTTGCTTTCCTACTATATCTAAGCTTAAAACAAATCATTACCAAAGCTCAATCTCCAACATATGTGGGAGATGACTGTAATTACTCAAAACAACAGCCTCTTAGCAATGCATACCAAAAAAATCTCAATAGCATCCTTTCATATCTGTCTAATGATTCAGCCACAAGCAAAGGTTATAACTATACCAGAATAGGGGACAACACGACTAAAGGTGATGCAGTGTATGGTCTCTATGATTGCCGCGGCGATGTGGTTGGATACTTTTGTGAATTTTGTGTCTCTTCTGCTTCCAGAGAAGTTCTTGGGCGCTGCCCGGATAGAGAATCTGCTACTATATTTTATAGCTTCTGCATTTTTAGGTACTCAAATGAGAACTTCTTTGGGAAAGTAACAACAGACCCTTGGTGGAATCATTTAGGAACCAAAAACGTCTCTAGTGCGATAGAGATTCAGAAAGGCGGTGATTTTATGAAACGTTTGATCAGAAAAGCAACTAATGAGACCAACCAGTTGTACTATATGGATGGTTTCAATTTGAGTTCTACGGAGAGTAGGTACGGACTGGTTCAATGCAGTAGAGATCTTACAAATGAAAGGTGCAGACAGTGTTTAGAGTTTATGTTAGCAAAGGTTCGCACATGTTGCGAACATAAGTTGGGATGGCAGGTTTCATCTGCTAGTTGTCTGATTAGGTATGATGATTATATGTTCTATCTGCTCCACGATCAATCACCTTCGGTACTTGTGCCTAATCCACAAACAGCAAATAAGAAGAGTACTAGTAAGTCAAGAAAGTTGATCATTGGCTTTAGTGTTGTTGGTATAGTAATTCTACTATGTTCCACTCTATATTACTTCTGGTACAAGAAAAGAGTTAGAAAAGATTGGCTGACACCTGCATATGAGGAAACACTTAATGCAGATTTGCCTACAATTCCACTGATCACAATTCAACATTCTACTGATAACTTTTCAGAAACATCTAAATTAGGGGAAGGTGGATTTGGATCTGTTTATAAGGGTATTCTGCCAGATGGAAGACAAATAGCAGTAAAAAGGCTCTCAAAAAATTCTGGTCAAGGCTCAGAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAACTGCAACATCGCAATCTTGTAAGACTTTTGGCATGCTGCTTGGAAGGAAATGAAAAGCTACTTGTGTATGAGTTTATGCCGAATGCAAGTCTCGACTTTCACCTGTTTGATGATGAAAAAAGAAAGGAACTTAATTGGAAACTAAGTTTAAGTATTATCAGTGGAATAGCAAAAGGTCTTTTATATCTCCACGAGGACTCTAGACTAAGGGTAATTCATAGAGATCTGAAAGCTAGCAATGTTTTACTAGATCATGAAATGAATCCCAAAATATCGGATTTTGGAATGGCAAGGGCATTTGAAATAGGTCAGAACCAGGCGAATACAAGACGAATAATGGGCACCTATGGATACATGGCACCAGAGTACGCAATGGAAGGAGTATTTTCTGTGAAATCTGATGTATTCAGCTTTGGAGTACTAGTTTTAGAAATCATTAGTGGGAAAAAGAATACCGGATTCTATCTGTCAGAACATGGTCAAAGTCTTCTTGTATATACATGGAAAAAATGGTGTGAAGGTAACTGTTTGGATATTATGCATTCGGTAGTTGGAAAAACCTGTATAGACAATGAAGTTGTGAGGTGCATAAACATTGGTCTATTGTGTGTTCAAGAAGACGCGGCAGATAGACCAACCATGTCAACTGTTGTTGTAATGTTGGCTAGTGACACAATGGCCCTTCCGAAACCGAAACAACCTGCATTTTCAATTGGAAGAATGACCTCTGATGACAATTCTGCCTCGAAAAGTTCCAAGACGCCTTCCATTAATGATGTAACAGTCTCAAACATCTTACCAAGGTAA	1980	0.3823	MIVLNMEGTQLNLASIFFAFLLYLSLKQIITKAQSPTYVGDDCNYSKQQPLSNAYQKNLNSILSYLSNDSATSKGYNYTRIGDNTTKGDAVYGLYDCRGDVVGYFCEFCVSSASREVLGRCPDRESATIFYSFCIFRYSNENFFGKVTTDPWWNHLGTKNVSSAIEIQKGGDFMKRLIRKATNETNQLYYMDGFNLSSTESRYGLVQCSRDLTNERCRQCLEFMLAKVRTCCEHKLGWQVSSASCLIRYDDYMFYLLHDQSPSVLVPNPQTANKKSTSKSRKLIIGFSVVGIVILLCSTLYYFWYKKRVRKDWLTPAYEETLNADLPTIPLITIQHSTDNFSETSKLGEGGFGSVYKGILPDGRQIAVKRLSKNSGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEGNEKLLVYEFMPNASLDFHLFDDEKRKELNWKLSLSIISGIAKGLLYLHEDSRLRVIHRDLKASNVLLDHEMNPKISDFGMARAFEIGQNQANTRRIMGTYGYMAPEYAMEGVFSVKSDVFSFGVLVLEIISGKKNTGFYLSEHGQSLLVYTWKKWCEGNCLDIMHSVVGKTCIDNEVVRCINIGLLCVQEDAADRPTMSTVVVMLASDTMALPKPKQPAFSIGRMTSDDNSASKSSKTPSINDVTVSNILPR*	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g1559	659	ProSiteProfiles	Gnk2-homologous domain profile.	36	143	IPR002902	-
	Tpr7g1559	659	ProSitePatterns	Protein kinases ATP-binding region signature.	347	369	IPR017441	GO:0005524
	Tpr7g1559	659	CDD	STKc_IRAK	347	612	-	-
	Tpr7g1559	659	Gene3D	Phosphorylase Kinase; domain 1	305	416	-	-
	Tpr7g1559	659	SUPERFAMILY	Protein kinase-like (PK-like)	327	645	IPR011009	-
	Tpr7g1559	659	ProSiteProfiles	Protein kinase domain profile.	341	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g1559	659	Gene3D	-	36	143	IPR038408	-
	Tpr7g1559	659	Gene3D	-	155	254	IPR038408	-
	Tpr7g1559	659	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	24	657	-	-
	Tpr7g1559	659	Pfam	Protein tyrosine and serine/threonine kinase	344	611	IPR001245	GO:0004672\|GO:0006468
	Tpr7g1559	659	Gene3D	Transferase(Phosphotransferase) domain 1	417	622	-	-
	Tpr7g1559	659	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE KINASE	24	657	-	-
	Tpr7g1559	659	Pfam	Salt stress response/antifungal	174	252	IPR002902	-
	Tpr7g1559	659	Pfam	Salt stress response/antifungal	43	140	IPR002902	-
	Tpr7g1559	659	SMART	serkin_6	341	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g1559	659	Pfam	Domain of unknown function (DUF3403)	614	659	IPR021820	GO:0004674
	Tpr7g1559	659	ProSiteProfiles	Gnk2-homologous domain profile.	149	254	IPR002902	-
	Tpr7g1559	659	MobiDBLite	consensus disorder prediction	631	651	-	-
	Tpr7g1559	659	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g1559	Tpr-Chr7	17627611	17631442	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g1559	17	659	Receptor kinase-like Gene Family	AT4G05200	40.976	1.05e-171	504

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tpr7g1559		PK_Tyr_Ser-Thr	3.9e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g1559	-		-	gmx:100795922	949.118