Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1525 ATGTCAATCTCAACCATTTCAATAACGCGTTTTGGTATCCCATTATTGAACATTTTTTTACATACCCTCTTGTTCTTTTTCTATAGTTCCTTTGTCTTTGCACATTTTCTTAGTCTTCAAAAAATAATCCATTTTTCAACTTTTTTTTTTTTGTTAATTTTAACCACCATGGGATATGGAACAAGAAAACTCTCAGATGAGTATGAAGTTTCGGAGATTCTAGGTAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAAAAAATCAAGCAATGAAGATGAAAAATCACAATCATCACAAGTAGTAGCAATAAAAACACTTAGAAGAGTAAGTTCTTCAAATAATCCTAGTGGATTACCAAGACCAAAAAAAGATGTTGGAGAAAGAAGTACAATGATGTTTCCTACATTTAGACAAGTTTCGGTTTCGGATGCATTATTAACAAATGAGATACTAGTAATGAGAAGAATAGTCGAAAACGTTTCGCCACATCCAAATGTGATTGATCTTTATGATGTATACGAGGATATAAATGGTGTTCATCTTGTGCTTGAGCTTTGTTCTGGTGGCGAACTTTTCGATAGGATTGTTGCACAAGATAAGTATAGTGAAACTGAAGCTGCAACTGTTGTTCATCAAATAGCTTCAGGGTTAGAAGCTATTCATAAAGCTAACATTGTTCATAGAGATTTGAAGCCTGAAAATTGTCTTTTTTTAGATGTTAGGAAAGATTCTAGTCTTAAGATTATGGATTTTGGATTAAGTTCTGTTGAAGAGTTTACTGACCCTGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAGAGTGATATGTGGTCTCTTGGAGTCATTTTATATATCTTACTTTCTGGGTATCCACCTTTCATTGCTCAAAATAATCGCCAAAAACAACAAATGATACTTAATGGGAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAATCAGCAAAGAATTTAATCTCAAGTCTTCTAACTGTTGATCCTAGTAAGAGACCTAGTGCTCAAGAGCTTCTAAGTGATCCATGGGTGAAAGGTGAGAAAGCAAAAGATGATCAAATGGACCCTGAAATTGTCTCAAGGCTACAAAGGTTTAATGCACGACGCAAACTTCGTGCAGCTGCAATTGCAAGTGTTTGGAGCTCAACCATCTTCCTTAGAACCAAAAAATTGAAATCATTGGTTGGATCCTATGATCTCAAAGAAGATGAAATTGAAAATCTCAGGATACATTTCAAGAAAATATGTTCAGATAGAGACAATGCGACCCTGGCTGAGTTTGAGGAGGTGTTAAAAGCAATGAATATGTTATCATTGATACCTTTTGCAGCTCGTATATTTGACTTGTTTGATAACAACCGTGATGGAACAGTTGATATGCGAGAGATACTTTGTGGATTTTCTAGTCTCAAGAACTCCAAAGGAGAGGATGCTCTTCGTTTATGCTTCCAGATGTATGACACAGATAGATCTGGATGCATCAGCAAGGAAGAAGTAGCATCTATGCTCAGAGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGGAAATTGGATGAGATTTTTGACTTAATGGATGCCAATAATGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAAAGAGATAGCTCTCTTCAAGATGTAGTCCTCTCGACTCTTCGCCCATAA 1749 0.3562 MSISTISITRFGIPLLNIFLHTLLFFFYSSFVFAHFLSLQKIIHFSTFFFLLILTTMGYGTRKLSDEYEVSEILGRGGFSVVRKGTKKSSNEDEKSQSSQVVAIKTLRRVSSSNNPSGLPRPKKDVGERSTMMFPTFRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDINGVHLVLELCSGGELFDRIVAQDKYSETEAATVVHQIASGLEAIHKANIVHRDLKPENCLFLDVRKDSSLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMILNGNFSFYEKTWKGISQSAKNLISSLLTVDPSKRPSAQELLSDPWVKGEKAKDDQMDPEIVSRLQRFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEDEIENLRIHFKKICSDRDNATLAEFEEVLKAMNMLSLIPFAARIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDEFKAAMQRDSSLQDVVLSTLRP* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1525 582 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Tpr7g1525 582 Pfam EF hand 467 483 IPR002048 GO:0005509
Tpr7g1525 582 Gene3D Phosphorylase Kinase; domain 1 63 94 - -
Tpr7g1525 582 SUPERFAMILY EF-hand 409 574 IPR011992 -
Tpr7g1525 582 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Tpr7g1525 582 ProSiteProfiles EF-hand calcium-binding domain profile. 495 530 IPR002048 GO:0005509
Tpr7g1525 582 Gene3D Transferase(Phosphotransferase) domain 1 192 384 - -
Tpr7g1525 582 ProSitePatterns EF-hand calcium-binding domain. 550 562 IPR018247 -
Tpr7g1525 582 SMART efh_1 463 491 IPR002048 GO:0005509
Tpr7g1525 582 SMART efh_1 541 569 IPR002048 GO:0005509
Tpr7g1525 582 SMART efh_1 499 527 IPR002048 GO:0005509
Tpr7g1525 582 SMART serkin_6 68 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr7g1525 582 Gene3D Phosphorylase Kinase; domain 1 134 191 - -
Tpr7g1525 582 PANTHER SERINE/THREONINE-PROTEIN KINASE 67 567 - -
Tpr7g1525 582 CDD EFh 466 525 IPR002048 GO:0005509
Tpr7g1525 582 ProSiteProfiles Protein kinase domain profile. 68 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr7g1525 582 Pfam Protein kinase domain 148 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr7g1525 582 Pfam EF-hand domain pair 498 567 IPR002048 GO:0005509
Tpr7g1525 582 PRINTS Recoverin family signature 467 488 - -
Tpr7g1525 582 PRINTS Recoverin family signature 491 510 - -
Tpr7g1525 582 PRINTS Recoverin family signature 557 577 - -
Tpr7g1525 582 CDD EFh 500 567 IPR002048 GO:0005509
Tpr7g1525 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Tpr7g1525 582 CDD STKc_CAMK 68 364 - -
Tpr7g1525 582 Gene3D - 385 577 - -
Tpr7g1525 582 SUPERFAMILY Protein kinase-like (PK-like) 62 383 IPR011009 -
Tpr7g1525 582 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Tpr7g1525 582 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 67 567 - -
Tpr7g1525 582 ProSitePatterns Protein kinases ATP-binding region signature. 74 105 IPR017441 GO:0005524
Tpr7g1525 582 ProSiteProfiles EF-hand calcium-binding domain profile. 537 572 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1525 Tpr-Chr7 17091341 17095902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1525 59 568 EF-hand Containing Proteins AT5G23580 34.241 3.29e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Tpr7g1525 Pkinase 2.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1525 K13412 - gmx:732616 887.486