Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1519 ATGTCCTCTCAAGAACTTGATCATGGGAGCAATGGCATCCACTTTTTAAAGATTATTCTTCAATCTACCCTTCAACAAGGAAAATTGAAAGTGCCTATAAGTTTTGTGAGGAGGCATTGGAAAGGAATAACAAACCCAGTTACTCTAAGTCTTCCAAATTTGACTGAAAAGAAAGTTTTTTGGGAGAAAACTAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCAAATTATTTGTCTTTGAGTGATTCACAATGTTTGGTGTTTCAATATCAAGGAAATTCGCTCTTTAATGTGATTGGATTCGGAAAATGCGGATTAGAAATAAAATACCCTTTAAAAGAAGCTAGTGAAGAATTTGAAGAAAGTGATTGTTCTTTAAAACTTATTGAGAATCCTTCGTCATTGCGGAGTAAAAGGCTAAAATCTTCGTCATCATCTTATAACGTTTGTAAGAAGATTAAAATCAACTCAAAAGAACAAAAAGAATTTAAAGATGACAAGAGAATAGTTCAAGCACAAGCAAGGTTTCCCAAATTTAAGGATATGGACAATGGTGAAATACTCAAAATTTTACCAGGAAATAGTTGTAATGATCTCAAGGAGAGAGGCTTAGTTTTGTACGAGAAAGTGAAGAAAAAGTTTCACTGTGATAAGGACTTCTTCGCATGTATGATCCACAAGACATACATTGAGAGAGATATGCTGGCCATACCAAATGAATTTGGTTATACACATCTACACAGAATGGAAGGAAGAAATGCGACACTTTTTATTGACCAAGAGAGAACATGGAATGTTGATTTAAAGCTCACACGAAGTAAACATAAACAATTCAGACTTACTAGTGGTTGGAGTAAATTTCGTGCTCACAATAATTTGAAATTAGGTGATGTTTGTGTTTTTATTCTAAACAAATGCAAAGGGACAGTTTCATTCCAAGTTGTTATTTTCTCTCTGGAAAAGGACATGAGTGCCCCATATTTTGAAGGGTTGTGA 1008 0.3403 MSSQELDHGSNGIHFLKIILQSTLQQGKLKVPISFVRRHWKGITNPVTLSLPNLTEKKVFWEKTSDYDVWFCNGWKEFANYLSLSDSQCLVFQYQGNSLFNVIGFGKCGLEIKYPLKEASEEFEESDCSLKLIENPSSLRSKRLKSSSSSYNVCKKIKINSKEQKEFKDDKRIVQAQARFPKFKDMDNGEILKILPGNSCNDLKERGLVLYEKVKKKFHCDKDFFACMIHKTYIERDMLAIPNEFGYTHLHRMEGRNATLFIDQERTWNVDLKLTRSKHKQFRLTSGWSKFRAHNNLKLGDVCVFILNKCKGTVSFQVVIFSLEKDMSAPYFEGL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1519 335 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 322 - -
Tpr7g1519 335 Pfam B3 DNA binding domain 224 316 IPR003340 GO:0003677
Tpr7g1519 335 SUPERFAMILY DNA-binding pseudobarrel domain 11 106 IPR015300 -
Tpr7g1519 335 ProSiteProfiles B3 DNA-binding domain profile. 224 324 IPR003340 GO:0003677
Tpr7g1519 335 CDD B3_DNA 224 322 IPR003340 GO:0003677
Tpr7g1519 335 PANTHER B3 DOMAIN-CONTAINING 7 322 - -
Tpr7g1519 335 Gene3D - 9 108 IPR015300 -
Tpr7g1519 335 SMART B3_2 224 324 IPR003340 GO:0003677
Tpr7g1519 335 SMART B3_2 15 108 IPR003340 GO:0003677
Tpr7g1519 335 Gene3D - 210 325 IPR015300 -
Tpr7g1519 335 SUPERFAMILY DNA-binding pseudobarrel domain 222 322 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1519 Tpr-Chr7 17000898 17003833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1519 15 314 B3 DNA Binding Superfamily AT3G18990 26.765 1.47e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr7g1519 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1519 - - mtr:MTR_4g119990 466.463