Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1462 ATGTTTGAAGATGAAATTGAAAGAGTCCGAATTCGATGTGGTTTTAATGCTGGGATTGCGGTTGGATGTACAGGTCATGGTAAAGATAGAGCAGGTGGTATTGCTTTGTGGTGGAATGATGCTACAAATATCACCATATCCTCCTATTCTCTAAATCATATTAATGGGACGGTTGGTGATGATTTGAATGGCGAGCCTTGGAGTATTACAGGAATTTATGGATTCCCAGAAGAATATAACAAGAGGAAAACGTGGGCTTTAATTAATGAGATTTCAACCTCTGCAGCTGAAAACTGGATTTGTTTTGGAGACTTGAATGATATTGTGTCTGCTACAGAGAAAGTAGGTGGCAATCCTAGAAGTCTCACTCAGTTAAATTTGGGTAGAGTGGCGATGGAAGAGTGCAGTTTGACAGATTTGGGATTCACTGGTTATCCTTTTACTTGGACAAATGGAAGAGAGGGCGAGGAGAACATTCAATGTCGTCTTGATAGGGCTATGGCTTCTTCTGGTTTCACAAACAGATTCAGCCCCATCAAAGTCACTCATTTACCTAGATTCAGATCCGATCACTCTGCTCTCCAAATTCTGCTGGAAGCGCATGACCATGATGGAAGAAATAAGAAACCTCACATTTTTCGGTTTGAAGAATGCTGGTCCAAAGATAGAAATTGTGAGTCTCTCATTAAGAAGTATTGGTCTAGCACTAGGGGTGACTGTGAGACAAAATTAGTTGCCCTTCAATCTCTAGATGTTGATTTTAAACACTATAGATCAAATGAGGTGAAAAAAGAGATTCTAAAAATAGAGGAGGCTTTAAAAGAAGAATGTTTGTGGGATGGTTCTAAGGATGAAATTCAGAAATATAGAGAAATGGAAAGAAAACACTCTGAACTTCTGCAACATGAAGAGCTACTTTGGAGACAACGCAGCAGGGCTGTTTGGTTAAAGGATGGAGATAAGAATACAAAATTCTTCCATGGAAAGGCTTCTCAAAGAAAGAAAACAAATGCTATAAAAAAGTTGAAAGATGAAGACGGTATTTGGTGGCATGGCCAAGATAAAGTGGAGGGTGTGTTAATTGATTTTTTCTCTGACTTATTTACATCATCTAATCCCACTAGTATGGATCAAGTATGTGAAGCAGTAAACAAAAAACTCTCAGATGATCAAAAGGACTGGTGCAGCCAACCTTACAACCTTGAAGAGATTAAAGAAGCTGTTGATCAAATGCATCCTTTAAAGGCTCCTGGCCCGGATGGAATACCTGCTCTTTTCTTTCAAAAATACTGGCATATTGTGGGTAAGGATACTTGTTTAAAGGTTTTGAGCATTCTTAATGATAATGGTACTCCTGAAAGTTTAAACCGAACTTTTGTGGCTTTAATTCCAAAGTGCAAGAATCCTGGTTCCCCAAATCACTTCAGGCCCATAAGTTTGTGCAATGTAATTATGAAAATTGTGACAAAATGCATAGCTAACAGAATGAAATGCATCCTACCAGAGGTTGTAGATGAAGAGCAAAGTGCATTTGTGAAAGGGAGATTGATAACTGACAACGCTCTGATAGCTATGGAATGTTTTCATTGGATGAAAAAGAAGACAAAAGGGAAGAAAGGAATGATGGCACTCAAGTTAGACATGGCAAAAGCTTATGATCGAATGGAGTGGCCTTTCATCAGATCAACTCTTCAAGCCACAGGTTTCCCGCCCACAATGATAAACCTGATTATGAACTGCATATCTACTGTGTCATATCAATTATTGGTGAATGGTCAACCAAGTAGAAGATTCAAGCCAGAAAGAGGTATTCGCCAAGGCGATCCATTATCCCCATATGTTTTTATTCTGTGTGCTAATGTATTATCTGGTATGTTACACAAGGGTGCTAGAAACAATAAGATTCACGGTCTTCAAGTGGCGAGGAATGCTCCAAAGATTACTCATTTACTTTTTGCGGATGATAGCCTTCTCTTTGCTAGAGCTAACCAGAAGGAAGCAGAGGTAATTATTAATATTCTCCAAACTTATCAGACAGCTTCAGGTCAATTAGTGAGTCTTGAGAAATCAGAAGTGTCATTTAGCCGAAATTTGCCAACTATTGAGAAGAATATGATCTGTAACAAGATTGATGTAAAGGCTGTGACAAATCACTCCAAGTACCTGGGACTTCCTGTTATTTTTGGTAGATCTAAGAAAGAAATCTTCGCTAGTGTTCAAGAGAGGATTTGGAAGAAGATCAAAGGTTGGAAAGAGAAATGTTTGTCAAGAGCGGGAAAGGAAACTTTGATAAAGTCAGTCGCCCAGGCCATCCCAAACTACATTATGAGTTGTTACAAGTTACCTACTGGTTGTTGTGATAATATTGAAGCTATGTTGGCAAAATTTTGGTGGGGAACAACTGAGAAGCAAAGGAAAATTCATTGGGTCAGTTGGAACAAACTAGGAAAGGCAAAGAGTAAAGGCGGTCTCGGATTCAGAAGCTTCGAAGATTTTAATAAAGCCCTTCTTGGGAAACAATGTTGGAGACTACTTCAAAATCCAGATTCACTTCTTGCAAAAGTGTTCAAGAGCAGGTACTTCCCAAGATCAAAATTCATGGATGCGAATGTGGGATATCAACCTAGCTATGCTTGGCGGAGCTTGTGTAATTCAAGAGAAGTAATTGATGTGGGAGCTAGATGGTTAATTGGTAATGGGAAGGATGTGCACATATGGAATGACAAATGGTTGCCGGCGCAAGACAAGTTCAAGGTCTGGAGTCCCGTGTCTAATTTGGCTCCTAATGCAATGGTTAGTGATTTGATCAATCTAGAGACAAAAATGTGGGACAAGAACCTGGTTCAAAATTGTTTCAATTCTTTTGAAGCCGAACAAATTCTTAATATTCCACTTTCTTGGAGACTTCCTGCTGACAAGTTGATTTGGCACTGGGAGAAAAATGGAGAATTTTCTGTACGTTCAGCTTACCATATGTTATCTGAAATTAGGAACCAAAACAGTCCCGAGGCATCTTCATCCAGAGATCACTTGTTGTGGAAGGCTATCTGGAAAGTAAATGTGCCAAATTGCATCAAGAATTTCTTATGGAGGTTGGCAAAAGCAATTCTCCCAACTAGAAGCAGACTGGAAAAGAAAGGGATCACTCTTGATACAACATGTCCTCTTTGTTTTAATGATATTGAATGCAATGAACATCTGTTCATGCATTGCCCTTTGTCTAAACAGGTTTGGTTCTCATCTCCTCTTGGGTTACATGCTCCTAACAATGTCGACCTAATTTCTTGGATGCAACTTTGGCTTTCAAATCCTGACAAATTAGCCTCCCAACTATTTAGCACTACTCTATGGATGATTTGGAAAGGAAGGAACAAGTTGATTTTTAAGAATGTGAAATTCTGTCCAATTTATGTTGCTGCTGCTAGTTCTGATTTTGTGGCAGAATTCAACTCAGGTTCTTGCTGTAATGAGAGCAATATAGTTCGCGAGAATCCGGACAGTTGGGAGCCTCCGGAGCAAGCAAAATTTAAAGTAAACATTGATGCAGGGTGCTTCTCTAATGGAACTACTGGATGGGGAATGATTATGAGAAACCATCTTGGTATGGTTGATTTTGCTGCAACTCATCTAGAGAAGATCAAAGTTTCTCCAACTCTGGCCGAGGCTATGGCGCTGCGATGGTGTTTAAAGTGGATTCAAGCTTCAACGCATCATGAGCATATCACCATTGAATCTGATTCTGAGATATCTGTCAAATGTCTACATGGCAGTGTTTGTGATGTTCTAGTGGAAAATATAATTCAAGATTGTAGAGATTTTCTTTCTAGATTGCCAAATGTAATTGTTGTTTTTATTAGAAGGAGCAAAAATTTTGCTGCTCATGAACTAGCTACTTTGGCTAGGAATCAACAAGAGTTGATGGAAGAGGAGAATGATCCAGTTGATGATAGTCTTAGTGAAATATTTACTTTCACTAAGATGCTGGAAACAAGTACACATGCTGCTGGACTTTATATTCCAAAGGAACATGCAGATAGATGCTTCCCTACACTGGATATGACTGGTCAACCACCAATGCAAGATTTAGTGATGAAGGACTTGCATGGAATTGAGTGGAATTTTCGACATATTTACTGTGATCATCAAAAAGCTCACTACCTTACAAGTGGTTGGAGCAAGTTCGTAAATTCTAAAAAACTTGTTCCCGGAGATTCATGCATTTTTGCCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCGTCGAGCCATGAAACAAGATAGTGATATATGGAAAACATCATCTACATTTGCACCAATGGGTGTTGCTTCCTTTGCTGTTTTAACAGGAACTATGTTCACTGTCCAGTACTACCCTTGGATTACTCCCTTTGAGTTTATGATCCCTCTGAAAACTTATGTTGAGTCCATTGAAAGAGACTACCCCATTGGAACGAGGGTACGTAGGTTGTCTCAAGATGAAGAATCTGCAAGAAGATATGGTACAATTGTTGGTAATGAAGATATTGATCCCATTAGGTGGCCTGGATCTGAATGGAGATGTATCAAGGTGCAATGGGATTCCAAACCACCAAATACTTTTACAGAACTTGAAAGGGTTTGTCCTTGGTGGATTGAGCCTTTGGGATCTCCCAAGATTAAGGGCTTTCCTATTCTTCCTTCATCAAATGAGGATATTGGGAGTTCAACCAAGGCTGACTATCACATAGTCGATATGGAAGTGCAAGGTAATGCAACTGGATGGGGAATGGTTATTTACAACCAATCAGGCCGTGTTGTTCTCTCAGCCTGCAGGAAAGAATTAATTGATGTTGAGCCTGTCTTGGCCGAGGCAATTGGTGTGAGATGGTGTCTTCAAAAAGCTATTGAATTAAATATGACAGACATTGTTATTGTATCTGATGCTGCCACTGTAGTAAGTTGTATTAACTCAAACAAGCATGTTGCTGTGATAGATTTAGTGATTCAAGATTGTAATTTACTTATTGAACAATTAGATAGTGTAGTTGTGACATATGTTAGGCGTCACCTAAATGTTGTTGCTCATGGATTAGCAGGTTTTTCAAATGTTGTTGGTACTAAATTGTGGATGGGAGTAGTTCCAAACTCCATATCTGCAGCACTTTGTAACACAGCTGGTGTATCAGCAGTTTTTAGTTAA 5181 0.3922 MFEDEIERVRIRCGFNAGIAVGCTGHGKDRAGGIALWWNDATNITISSYSLNHINGTVGDDLNGEPWSITGIYGFPEEYNKRKTWALINEISTSAAENWICFGDLNDIVSATEKVGGNPRSLTQLNLGRVAMEECSLTDLGFTGYPFTWTNGREGEENIQCRLDRAMASSGFTNRFSPIKVTHLPRFRSDHSALQILLEAHDHDGRNKKPHIFRFEECWSKDRNCESLIKKYWSSTRGDCETKLVALQSLDVDFKHYRSNEVKKEILKIEEALKEECLWDGSKDEIQKYREMERKHSELLQHEELLWRQRSRAVWLKDGDKNTKFFHGKASQRKKTNAIKKLKDEDGIWWHGQDKVEGVLIDFFSDLFTSSNPTSMDQVCEAVNKKLSDDQKDWCSQPYNLEEIKEAVDQMHPLKAPGPDGIPALFFQKYWHIVGKDTCLKVLSILNDNGTPESLNRTFVALIPKCKNPGSPNHFRPISLCNVIMKIVTKCIANRMKCILPEVVDEEQSAFVKGRLITDNALIAMECFHWMKKKTKGKKGMMALKLDMAKAYDRMEWPFIRSTLQATGFPPTMINLIMNCISTVSYQLLVNGQPSRRFKPERGIRQGDPLSPYVFILCANVLSGMLHKGARNNKIHGLQVARNAPKITHLLFADDSLLFARANQKEAEVIINILQTYQTASGQLVSLEKSEVSFSRNLPTIEKNMICNKIDVKAVTNHSKYLGLPVIFGRSKKEIFASVQERIWKKIKGWKEKCLSRAGKETLIKSVAQAIPNYIMSCYKLPTGCCDNIEAMLAKFWWGTTEKQRKIHWVSWNKLGKAKSKGGLGFRSFEDFNKALLGKQCWRLLQNPDSLLAKVFKSRYFPRSKFMDANVGYQPSYAWRSLCNSREVIDVGARWLIGNGKDVHIWNDKWLPAQDKFKVWSPVSNLAPNAMVSDLINLETKMWDKNLVQNCFNSFEAEQILNIPLSWRLPADKLIWHWEKNGEFSVRSAYHMLSEIRNQNSPEASSSRDHLLWKAIWKVNVPNCIKNFLWRLAKAILPTRSRLEKKGITLDTTCPLCFNDIECNEHLFMHCPLSKQVWFSSPLGLHAPNNVDLISWMQLWLSNPDKLASQLFSTTLWMIWKGRNKLIFKNVKFCPIYVAAASSDFVAEFNSGSCCNESNIVRENPDSWEPPEQAKFKVNIDAGCFSNGTTGWGMIMRNHLGMVDFAATHLEKIKVSPTLAEAMALRWCLKWIQASTHHEHITIESDSEISVKCLHGSVCDVLVENIIQDCRDFLSRLPNVIVVFIRRSKNFAAHELATLARNQQELMEEENDPVDDSLSEIFTFTKMLETSTHAAGLYIPKEHADRCFPTLDMTGQPPMQDLVMKDLHGIEWNFRHIYCDHQKAHYLTSGWSKFVNSKKLVPGDSCIFARGENGEIGIGIRRAMKQDSDIWKTSSTFAPMGVASFAVLTGTMFTVQYYPWITPFEFMIPLKTYVESIERDYPIGTRVRRLSQDEESARRYGTIVGNEDIDPIRWPGSEWRCIKVQWDSKPPNTFTELERVCPWWIEPLGSPKIKGFPILPSSNEDIGSSTKADYHIVDMEVQGNATGWGMVIYNQSGRVVLSACRKELIDVEPVLAEAIGVRWCLQKAIELNMTDIVIVSDAATVVSCINSNKHVAVIDLVIQDCNLLIEQLDSVVVTYVRRHLNVVAHGLAGFSNVVGTKLWMGVVPNSISAALCNTAGVSAVFS* 1727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1462 1726 Gene3D - 1577 1696 IPR036397 GO:0003676
Tpr7g1462 1726 Gene3D - 1174 1307 IPR036397 GO:0003676
Tpr7g1462 1726 SUPERFAMILY Ribonuclease H-like 1583 1693 IPR012337 -
Tpr7g1462 1726 SMART B3_2 1324 1424 IPR003340 GO:0003677
Tpr7g1462 1726 CDD RNase_H_like 1582 1692 IPR044730 -
Tpr7g1462 1726 PANTHER REVERSE TRANSCRIPTASES 188 1186 - -
Tpr7g1462 1726 Gene3D - 1481 1552 - -
Tpr7g1462 1726 Pfam zinc-binding in reverse transcriptase 984 1078 IPR026960 -
Tpr7g1462 1726 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 467 725 IPR000477 -
Tpr7g1462 1726 Pfam B3 DNA binding domain 1329 1423 IPR003340 GO:0003677
Tpr7g1462 1726 CDD RNase_H_like 1178 1297 IPR044730 -
Tpr7g1462 1726 Gene3D - 1321 1424 IPR015300 -
Tpr7g1462 1726 SUPERFAMILY DNase I-like 23 197 IPR036691 -
Tpr7g1462 1726 SUPERFAMILY DNA/RNA polymerases 363 694 IPR043502 -
Tpr7g1462 1726 Gene3D Endonuclease/exonuclease/phosphatase 5 198 IPR036691 -
Tpr7g1462 1726 Pfam Auxin response factor 1444 1523 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr7g1462 1726 SUPERFAMILY Ribonuclease H-like 1176 1304 IPR012337 -
Tpr7g1462 1726 ProSiteProfiles B3 DNA-binding domain profile. 1322 1424 IPR003340 GO:0003677
Tpr7g1462 1726 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 444 726 IPR000477 -
Tpr7g1462 1726 Pfam Reverse transcriptase-like 1182 1299 IPR002156 GO:0003676|GO:0004523
Tpr7g1462 1726 Pfam Reverse transcriptase-like 1582 1692 IPR002156 GO:0003676|GO:0004523
Tpr7g1462 1726 CDD RT_nLTR_like 457 726 - -
Tpr7g1462 1726 PANTHER - 188 1186 - -
Tpr7g1462 1726 CDD B3_DNA 1322 1422 IPR003340 GO:0003677
Tpr7g1462 1726 SUPERFAMILY DNA-binding pseudobarrel domain 1319 1429 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1462 Tpr-Chr7 16213862 16222560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1462 1320 1558 B3 DNA Binding Superfamily AT5G62000 46.000 1.57e-60 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr7g1462 RVT_1 2.4e-42 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1462 - - qsu:111990748 937.176