Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1415 ATGGCTTTTGAGGGGAACAACGCTGCAAAAAAAGAAAACACACGGAAGAGAAAGATTGATGAAATCAAGAAAGCCGACTTTTCAAAACGCAAACTCGGACTCTTCAACAAAGTAACAGAGCTCTCTATCTTATGCAAAGCAAAAACTGCACTCATCATCAGATCGTCCAACAACGAGCTGGATGCATGTGGCTATCCCGATTGTGACGCTGTTGTTCAACAGTTTCTAGCCGGAAAGGTCATCACGGAGGACTATGACAAAAAGAAGAAAGAGGAGGTTGTGGAAATCCAAAGGCTTGAATATGAGACAATCGTAGATAAACTTATGGAACTCAAGGAAGAGGAGAAAAATTTGGAAGCTATCAATGATGAGGCAGAGAAGAGTGGTTATGGTATTCCTGATTGGTGGAATGGTTCTATTGATGATATGAGTTTAGAATCTCTTCAGGAATTTAAAAATTCTTTGGAAACATTGAAGCTTAATTTGAGACTTAATTTAGATGCAAAGAAGTTAATGTAG 519 0.3873 MAFEGNNAAKKENTRKRKIDEIKKADFSKRKLGLFNKVTELSILCKAKTALIIRSSNNELDACGYPDCDAVVQQFLAGKVITEDYDKKKKEEVVEIQRLEYETIVDKLMELKEEEKNLEAINDEAEKSGYGIPDWWNGSIDDMSLESLQEFKNSLETLKLNLRLNLDAKKLM* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1415 172 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Tpr7g1415 172 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Tpr7g1415 172 SMART madsneu2 14 66 IPR002100 GO:0003677|GO:0046983
Tpr7g1415 172 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 18 170 - -
Tpr7g1415 172 ProSiteProfiles MADS-box domain profile. 23 67 IPR002100 GO:0003677|GO:0046983
Tpr7g1415 172 SUPERFAMILY SRF-like 11 78 IPR036879 GO:0003677|GO:0046983
Tpr7g1415 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 60 IPR002100 GO:0003677|GO:0046983
Tpr7g1415 172 Gene3D - 20 101 IPR036879 GO:0003677|GO:0046983
Tpr7g1415 172 PANTHER MADS BOX PROTEIN 18 170 - -
Tpr7g1415 172 Coils Coil 94 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1415 Tpr-Chr7 15341590 15342108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1415 24 159 Type I MADS-box Gene Family AT5G60440 25.352 5.56e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr7g1415 SRF-TF 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1415 - - mtr:MTR_2g045020 156.762