Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1397 ATGAATCCTGTTTTTGTTCGCCGGGGTTTCAATGCTGCTGCTGGTTTCATCGTACCCGGTTCCATGCTGGACAATACTTTTGTCCTTGATTCCTTTGTCGCCGCCGCCAATAATACTGATGGTCGTCGTCGTCCTCGGAACAACAACAACAACATGGGGTTGTTCTCTTCACCGGTAGCAATTGATTCCTCTGTCGCCGCACCCAATAATACGGGTGGTCATCGTCCCCGGAACAACAACAACAACATGAGGCCTGTAGCAACAACAAGGGACGTAGGTCCACCAAATCTTCATACTGGAAGAGACAGAATCAGAATGGTAGATGATACTATTCTTCTCGTTGATAATAATTCTTATTCTATCGCTAACAACAACACCATGGGGGGTCACAACAATGCTCTGCTTGATGATGTACCATTCTATCATTCTCCTCAACTTGATTTCATCAATCTTGATGAAATTGCAACAACAGATTTTTCAAAAACAGATGATCCATGCTCCATATGTCTTTGTGAATTGTCTACTGATTCAACGGCAGTTCAGATTCCCCGTTGCTCTCATATATTCCACAGCGACTGTATTCAAAAGTGGATCGGTGTGAGGAGAACATGCCCCCTTTGTAGAATCAACCTCCTTTAG 639 0.4413 MNPVFVRRGFNAAAGFIVPGSMLDNTFVLDSFVAAANNTDGRRRPRNNNNNMGLFSSPVAIDSSVAAPNNTGGHRPRNNNNNMRPVATTRDVGPPNLHTGRDRIRMVDDTILLVDNNSYSIANNNTMGGHNNALLDDVPFYHSPQLDFINLDEIATTDFSKTDDPCSICLCELSTDSTAVQIPRCSHIFHSDCIQKWIGVRRTCPLCRINLL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1397 212 CDD RING-H2_PA-TM-RING 166 208 - -
Tpr7g1397 212 MobiDBLite consensus disorder prediction 69 87 - -
Tpr7g1397 212 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 84 211 - -
Tpr7g1397 212 SUPERFAMILY RING/U-box 159 211 - -
Tpr7g1397 212 SMART ring_2 166 207 IPR001841 -
Tpr7g1397 212 Pfam Ring finger domain 166 208 IPR001841 -
Tpr7g1397 212 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 84 211 IPR044675 -
Tpr7g1397 212 MobiDBLite consensus disorder prediction 69 97 - -
Tpr7g1397 212 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Tpr7g1397 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 211 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1397 Tpr-Chr7 15016212 15016850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1397 129 212 C3H Transcription Factor Family AT2G18650 38.095 1.21e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1397 K19039 - bvg:104896045 69.707