Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g1381 | ATGGCTTTTGAGGGGAACAACGCTGCAAAAAAAGAAAACCCACGGAAGAGAAGGATTGATGAAATCAAGAAAGCCGACTTTTCAAAACGCAAACTCGGGCTCTTCAACAAAGTAACAGAGCTCTCTATCTTATGCAAAGCAAAAACTGCACTCATCGTCAGATCGTCCAACAACGAGCTGGATGCATGTGGCTATCCCGATTGTGACGCTGTTGTTCAACAGTTTCTAACTGGAAAGGTCATCACGGAGGACTATGACAAAAAGAAGAAAGAGGAGGTTGTGGAAATCCAAAGGCTTGAATATGAGACAATCGTAGATAAACTTATGGAACTCAAGGAAGAGGAGAAAAATTTGGAAGCTATCAATGATGAGGCAGAGAAGAGTGGTTATGGTATTCCTGATTGGTGGAATGGTTCTATTGATGATATGAGTTTAGAATCTCTTCAGGAATTTAAAAATTCTTTGGAAACATTGAAGCTTAATTTGAGACTTAATTTAGATGCAAAGAAGTTAATGTAG | 519 | 0.3911 | MAFEGNNAAKKENPRKRRIDEIKKADFSKRKLGLFNKVTELSILCKAKTALIVRSSNNELDACGYPDCDAVVQQFLTGKVITEDYDKKKKEEVVEIQRLEYETIVDKLMELKEEEKNLEAINDEAEKSGYGIPDWWNGSIDDMSLESLQEFKNSLETLKLNLRLNLDAKKLM* | 173 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g1381 | 172 | ProSiteProfiles | MADS-box domain profile. | 23 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr7g1381 | 172 | PANTHER | MADS BOX PROTEIN | 15 | 170 | - | - | |
Tpr7g1381 | 172 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 24 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr7g1381 | 172 | Gene3D | - | 20 | 100 | IPR036879 | GO:0003677|GO:0046983 | |
Tpr7g1381 | 172 | SMART | madsneu2 | 14 | 66 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr7g1381 | 172 | PRINTS | MADS domain signature | 29 | 44 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr7g1381 | 172 | PRINTS | MADS domain signature | 44 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr7g1381 | 172 | SUPERFAMILY | SRF-like | 15 | 78 | IPR036879 | GO:0003677|GO:0046983 | |
Tpr7g1381 | 172 | Coils | Coil | 94 | 128 | - | - | |
Tpr7g1381 | 172 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN | 15 | 170 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr7g1381 | Tpr-Chr7 | 14742289 | 14742807 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g1381 | 24 | 159 | Type I MADS-box Gene Family | AT5G60440 | 26.056 | 2.49e-14 | 67.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Tpr7g1381 | SRF-TF | 1.8e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g1381 | - | - | cam:101507050 | 147.902 |