LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g1361	ATGAAACACTGTATTTTGGGTTCTGCACTTGTTATTGCTCTTTGTGTTTTCAGCTGTTCGGTTGACTTTTCACAAGCTCAAACTGCAAACGCTACTACAGATCCTTCTGAAGCAAGAGTTCTAAATTCAATATTTAGCAAATGGAGCATAAAAGCAGATCAAACTCAATGGAACATAAGCGGTGAGCTATGCAGTGGAAGAGCCATTGATAGCAGCGCCATCGATGACACTACCTTTGATCCATTCATCAAATGTGATTGTTCCTTTAACAACAAAACTACATGCCGCATCACTGCACTGAAAGTTTATTCATTGGATGTGGTTGGTGAAATTCCACCAGAGCTATGGACTCTTGTTTATCTCACCAATTTGAACCTTGGCCAAAATTACTTGAATGGGTCTCTACCTCCGGCAATTGGAAATCTGACTCGTATGCAATACATGTCCATTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAGTTGGGAGATCTTACTCAGTTGGTTATATTGGGTTTTGGGTCTAATAACTTCTCAGGATCTTTGCCATCTGAACTTGGGAAGTTGGTAAAACTAGAACAACTCTACATGGATAGTTCTGGAATTAGTGGTCCAATTCCACCCACATTTACAAACCTTAACAATTTGGTGACAGTATGGGCATCAGACACAGAACTCACAGGCAGAATACCCGACTTCATAGGAAATTGGTCTAAGCTTCAATCTTTGAGGTTTGAGGGTAATTCCTTTGAAGGTCCAATACCCTCGTCATTTTCCAATTTAACTTCTTTGACACAATTGAGAATAAGTGGTCTATCTAATGGAAGCTCCTCATTGGAATTAGTAAGGAATATGAAGTCTTTGACAACCTTAGAATTGAGGAATAACAATGTTTCTGGTTCTATTCCTCCCTCCTTAGGAGAATTTCAAAATTTGACCCAACTGGACTTGAGCTTCAATAAAATCTCAGGACAAATTCCTGGATCAATTTTCAATTTGAGTTTGCTCTCTTCCTTGTTTCTTGGAAATAACACACTTAGTGGCACTCTCCCTCGGCAGAAAAGTTCATCTCTTAAAAACATAGACTTGTCATACAATGATCTATCTGGAAGCTTCCCTTCTTGGATAAACGAACCAAATTTACAACTGAACATAGTTGCCAACAACTTGACAATAGTAAATTCAAATAGCAGTGGTTTGCCTACTGGGATCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGCACGATATTCTGAGTTTGCAATCAAGTGCGGTGGTCCCCAAATTAGAACTACAGATGGAATTGTTTATCAAACGGACAATGAAACACTTGGTCCTGCTACGTACTTTGTTACAGATACAAATAGATGGGCCGTTAGTAATGTTGGAATATTTACCGGGATCAGCAATCCTCTGTTCAAAAGTTTTGTTTCTAATCAGTTCACTGGTACTGTGAACCCAGAGCTTTTTCAAACTGCTCGGCTCTCTGCATCATCATTAAGATATTACGGATTGGGATTAGAAAATGGATTTTATAACGTTACCCTCCAATTTGCGGAAACAGCCATTCTTGATTCTGCCACATGGAAAAGCCTTGGGAGACGGGTCTTTGATATTTATATCCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGAGAAGCTGGTGGTGTCTCATATAGAGCTGTTCAAAAGAAATTTAGGTTTCAAGTGAAAGAAAACTATCTCGAGATCCATCTTTTTTGGGCTGGAAAAGGGACTTGCTGCATACCTGGTCAAGGTACTTATGGACCCTTGATTCAAGCCATCAATGCTATCCCAGATTTCATACCTACTGTAAGCAATAAACCTCCTAGCAGTAAAAAGAATAGAGCTGGTCTAATCATTGGAATTGTTGTTGGTGTTGGAGTTGTTTGCTTTCTAGTAGTTTTTGCCATTTTCTATATCAAGCGGAGAAGAAAGTTCAATGATGACAACGAAGAGCTTTTAGGCATTGATATAATGCCAAACACTTTCAGCTACTCCGAGTTAAAAAATGCTACAAGCGACTTCAATCGTGACAATAAACTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGAAACTAAATGATGGAAGAGATGTGGCTGTGAAACAATTATCTATAGGATCCCATCAAGGAAAGAGTCAGTTCGTAGCTGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATATGGATGTTGTATTGAAGGGAGCAAACGACTACTTGTGTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGATTTATTCCTCAATTGGTCAACCCGTTATGATATTTGTATGGGTGTTGCAAGAGGATTGACATATTTACATGAGGAGTCACGACTCCGAATTGTGCACCGTGATGTGAAGGCTAGTAATATTCTACTCGACTCTGATCTTGTTCCAAAAATATCTGATTTTGGATTGGCTAAATTATATGATGATAAAAAAACCCATATAAGCACCCGTGTTGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGCGGACACCTCACAGAGAAAGCAGATGTTTTTTCATTTGGGGTTGTGGCTCTCGAGTTAGTTAGTGGGAGGCCAAATTCTGATACAAGTTTGGAAGGAGAAAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAGGAACTGTACAGATGATCTGAAAGATCCTAGACTATCAGAATTCAACAAGGAAGAAGTCCAACGTCTTGTGGCAATAGCCCTTTTGTGCACTCAAACATCACCAACTTTACGACCATCAATGTCGCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCACTGTAACAGCAAGGCCCGGATACTTGACTGACTGGAAATTTGACGATGTTAGTAGCATCATGACTGACATTTCAATGAAGGAATCAGATACAAGTAATTACAATTCAACAGCAAGTACCAGCATAGTTGGTGGACAAAATATTCATTCACCAAATGATCCTTCTAAATCCATCCTTCATGGGACTATTAAAGAGGGTAGGTAA	3093	0.3967	MKHCILGSALVIALCVFSCSVDFSQAQTANATTDPSEARVLNSIFSKWSIKADQTQWNISGELCSGRAIDSSAIDDTTFDPFIKCDCSFNNKTTCRITALKVYSLDVVGEIPPELWTLVYLTNLNLGQNYLNGSLPPAIGNLTRMQYMSIGINALSGELPKELGDLTQLVILGFGSNNFSGSLPSELGKLVKLEQLYMDSSGISGPIPPTFTNLNNLVTVWASDTELTGRIPDFIGNWSKLQSLRFEGNSFEGPIPSSFSNLTSLTQLRISGLSNGSSSLELVRNMKSLTTLELRNNNVSGSIPPSLGEFQNLTQLDLSFNKISGQIPGSIFNLSLLSSLFLGNNTLSGTLPRQKSSSLKNIDLSYNDLSGSFPSWINEPNLQLNIVANNLTIVNSNSSGLPTGINCLQKNFPCNRGAARYSEFAIKCGGPQIRTTDGIVYQTDNETLGPATYFVTDTNRWAVSNVGIFTGISNPLFKSFVSNQFTGTVNPELFQTARLSASSLRYYGLGLENGFYNVTLQFAETAILDSATWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSYRAVQKKFRFQVKENYLEIHLFWAGKGTCCIPGQGTYGPLIQAINAIPDFIPTVSNKPPSSKKNRAGLIIGIVVGVGVVCFLVVFAIFYIKRRRKFNDDNEELLGIDIMPNTFSYSELKNATSDFNRDNKLGEGGFGPVYKGKLNDGRDVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNDLFLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSDLVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDTSLEGEKMYLLEWAWQLHERNCTDDLKDPRLSEFNKEEVQRLVAIALLCTQTSPTLRPSMSRVVAMLSGDIEVSTVTARPGYLTDWKFDDVSSIMTDISMKESDTSNYNSTASTSIVGGQNIHSPNDPSKSILHGTIKEGR*	1031

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g1361	1030	CDD	STKc_IRAK	695	956	-	-
	Tpr7g1361	1030	Gene3D	Transferase(Phosphotransferase) domain 1	765	967	-	-
	Tpr7g1361	1030	MobiDBLite	consensus disorder prediction	1005	1030	-	-
	Tpr7g1361	1030	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	808	820	IPR008271	GO:0004672\|GO:0006468
	Tpr7g1361	1030	Pfam	Leucine Rich repeats (2 copies)	287	324	IPR025875	-
	Tpr7g1361	1030	Gene3D	Ribonuclease Inhibitor	34	276	IPR032675	-
	Tpr7g1361	1030	SUPERFAMILY	L domain-like	95	393	-	-
	Tpr7g1361	1030	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	137	1007	-	-
	Tpr7g1361	1030	SUPERFAMILY	Protein kinase-like (PK-like)	673	982	IPR011009	-
	Tpr7g1361	1030	SMART	serkin_6	689	956	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g1361	1030	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	137	1007	-	-
	Tpr7g1361	1030	Gene3D	Phosphorylase Kinase; domain 1	661	764	-	-
	Tpr7g1361	1030	ProSiteProfiles	Leucine-rich repeat profile.	312	334	IPR001611	GO:0005515
	Tpr7g1361	1030	Gene3D	-	422	612	-	-
	Tpr7g1361	1030	Gene3D	Ribonuclease Inhibitor	277	410	IPR032675	-
	Tpr7g1361	1030	ProSiteProfiles	Protein kinase domain profile.	689	962	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr7g1361	1030	MobiDBLite	consensus disorder prediction	1005	1020	-	-
	Tpr7g1361	1030	Pfam	Protein tyrosine and serine/threonine kinase	692	956	IPR001245	GO:0004672\|GO:0006468
	Tpr7g1361	1030	Pfam	Malectin domain	423	608	IPR021720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g1361	Tpr-Chr7	14464311	14479680	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g1361	102	275	Receptor kinase-like Gene Family	AT1G56120	25.287	5.07e-10	61.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tpr7g1361		PK_Tyr_Ser-Thr	5.8e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g1361	-		-	mtr:MTR_8g445800	1691.4