Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1353 ATGGACGGACTAGATCTTCCTTACGATCCTCGTACTGTCGAAGAAGTCTTTCGTGATTTCAAAGGTCGCAGAGCTGCCTTAATCAAAGCCCTCACCATTGATATCGAAGAATTCTACCAGCAGTGTGATCCAGACAAGGAAAACCTTTGCCTTTATGGATTTCCGAGTGAGCAGTGGGCGGTCGATCTGCCAAATGAGGAAGTGCCACCTGATCTTCCAGAGCCTGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTCTCTTTGGTTGCTGTACACAGCGATGCTTGGTTACTTTCTGTGGCTTTTTATTTTGGTGCTAGGTTCGGATTCGACAAATCTGACAGGAAGCAACTATTTGATATGATAAATGATCTTCCAACAATCTTTGAAGATGTTACAGGGTTGGCCAAGACACAACGAAAGAGAAAGTCAGTTTCTAATAATAGCAGTACCAAAGCCAAATCAAACTCTAAGCGAGGTTCTGAACCTCGGAAAAAGGATTCAAAACCAATGGCAATGCAAACGCAATCAAATGAAGATGATGAGGATGGTCTCAGTGCAGACGAGGAAGATTTTGAGGAAGAACATGAAGATTCATCGTGTGGGGCATGTGGAGAAAGCTATTCAACTGACGAGTTTTGGATTTGCTGCGACATATGTGAGAAGTGGTTTCATGGAAAATGCGTGAAGATTACTCCGGCGAAGGCTAAGCATATCAAACAATACAAATGTTCAGGTTGCAGCAAGAGAGCTTGCAGTTGA 780 0.4333 MDGLDLPYDPRTVEEVFRDFKGRRAALIKALTIDIEEFYQQCDPDKENLCLYGFPSEQWAVDLPNEEVPPDLPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKQLFDMINDLPTIFEDVTGLAKTQRKRKSVSNNSSTKAKSNSKRGSEPRKKDSKPMAMQTQSNEDDEDGLSADEEDFEEEHEDSSCGACGESYSTDEFWICCDICEKWFHGKCVKITPAKAKHIKQYKCSGCSKRACS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1353 259 ProSiteProfiles Zinc finger PHD-type profile. 204 256 IPR019787 -
Tpr7g1353 259 Pfam PHD-finger 207 255 IPR019787 -
Tpr7g1353 259 PANTHER CPG BINDING PROTEIN 7 256 IPR045104 GO:0006355|GO:0042393
Tpr7g1353 259 MobiDBLite consensus disorder prediction 145 162 - -
Tpr7g1353 259 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Tpr7g1353 259 ProSitePatterns Zinc finger PHD-type signature. 207 253 IPR019786 -
Tpr7g1353 259 SUPERFAMILY FYVE/PHD zinc finger 193 255 IPR011011 -
Tpr7g1353 259 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 7 256 - -
Tpr7g1353 259 MobiDBLite consensus disorder prediction 145 198 - -
Tpr7g1353 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 255 IPR013083 -
Tpr7g1353 259 CDD PHD_AL_plant 207 256 IPR044104 -
Tpr7g1353 259 SMART PHD_3 206 254 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1353 Tpr-Chr7 14361007 14365351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1353 1 257 Alfin-like Transcription Factor Family AT3G42790 64.093 1.89e-107 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tpr7g1353 Alfin 2.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1353 - - cam:101493315 413.69