Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1343 ATGGATTTCACCACAAACCTCAACGACCTTCCACCCAACAAGAGAATCAGACTCATTCAACAAAAACAACAACAGCAACAACAACATAGTCCATGTTCACTCTTGCCCACCAAAAAACGCAAAGAATCTCGAAACACATCACTTTTTCACAATCCACAATCAACACCATCACCATCTATTTATTCTCTACCCACCAAAAAAAGAGTCTGTGCTCTCCAACCTCACCTTTACCACCACCACCACCACAATGCCCCAAATGACGTCGTTTCAAAATTCGATCTCAATGTCGAATACAACCCTGCTCTTCACTCACCAACTCCAACCGAGAAACAACCTCAAAAACATGATACCGATAACAACAACAATGACGACGACAACGGCCAAGATGTTGTCGCTGATGATGATGGGATTTTATGCTGTGTGTGTCAGAGCACAGACGCTAACGCGGAGGATCCAATTGTTTTCTGTGACGGTTGTAATTTAATGGTTCATGCTTCTTGCTATGGAAACCCATTAGCAAAAGAAATCCCTGAAGGGGATTGGTTTTGTGAACGGTGTCGTTTTATTAAAAACGACACTGATCTGGTTCATTGCTCCCTCTGTCCGAATACAGAGGGAGCAATGAAACAAACAATAGATGGAAAATGGGCACACTTGGTTTGTGCTTTACTTGTGCCTGAAGTGTTTTTTGTAGATCCAGAAGGGAGAGATGGGATTGATTGTTCTAAAGTTCCAAAGAAGAGGTGGTTGGAAAAGTGTTATGTTTGTGAGTGCTGTGATGGGTGTGCTTTGGTTTGTTCTGAACCTAAATGTGGTTTGGGTTTTCATATTACTTGTGGAATCAAAGAGGATCTTTGTATTGAGTATAAAGAAGGGAAAAAAGGTGCTACTGTTGTTGCTGGTTTTTGCAAATCTCACTCTCAACTCTGGGAAAAGCAACAGGTATCAGGAAAATACAAGATTGTTGCAGTTGAAGATAAGTAG 984 0.4136 MDFTTNLNDLPPNKRIRLIQQKQQQQQQHSPCSLLPTKKRKESRNTSLFHNPQSTPSPSIYSLPTKKRVCALQPHLYHHHHHNAPNDVVSKFDLNVEYNPALHSPTPTEKQPQKHDTDNNNNDDDNGQDVVADDDGILCCVCQSTDANAEDPIVFCDGCNLMVHASCYGNPLAKEIPEGDWFCERCRFIKNDTDLVHCSLCPNTEGAMKQTIDGKWAHLVCALLVPEVFFVDPEGRDGIDCSKVPKKRWLEKCYVCECCDGCALVCSEPKCGLGFHITCGIKEDLCIEYKEGKKGATVVAGFCKSHSQLWEKQQVSGKYKIVAVEDK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1343 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 309 IPR013083 -
Tpr7g1343 327 Pfam PHD-finger 139 187 IPR019787 -
Tpr7g1343 327 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 110 - -
Tpr7g1343 327 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 123 323 - -
Tpr7g1343 327 MobiDBLite consensus disorder prediction 21 62 - -
Tpr7g1343 327 ProSitePatterns Zinc finger PHD-type signature. 139 186 IPR019786 -
Tpr7g1343 327 ProSiteProfiles Extended PHD (ePHD) domain profile. 195 307 IPR034732 -
Tpr7g1343 327 MobiDBLite consensus disorder prediction 103 122 - -
Tpr7g1343 327 CDD PHD_BRPF_JADE_like 138 186 - -
Tpr7g1343 327 Pfam PHD-zinc-finger like domain 197 306 - -
Tpr7g1343 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 193 IPR013083 -
Tpr7g1343 327 SMART PHD_3 138 187 IPR001965 -
Tpr7g1343 327 SMART PHD_3 252 307 IPR001965 -
Tpr7g1343 327 SUPERFAMILY FYVE/PHD zinc finger 133 202 IPR011011 -
Tpr7g1343 327 MobiDBLite consensus disorder prediction 47 62 - -
Tpr7g1343 327 ProSiteProfiles Zinc finger PHD-type profile. 136 189 IPR019787 -
Tpr7g1343 327 PANTHER PHD FINGER PROTEINS 6 110 - -
Tpr7g1343 327 PANTHER PHD FINGER PROTEINS 123 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1343 Tpr-Chr7 14248411 14250087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1343 14 326 C2H2 Transcription Factor Family AT3G14740 47.561 7.21e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr7g1343 zf-HC5HC2H_2 2.6e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1343 K11380 - gmx:100802652 386.341