Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1283 ATGAATGCCAGTGAATTAGAGACTGAGAAATTTTGGAAGGAAGAAAGACCTGAGTTTGATCAATATTGGGAGGAAAGGTCTGTAGAAGCAAAAGAATTCAATCAAAAAGCTTATTTCCCTGATCCTTTCGAAGTCTCTGGCAACCTAACTGCTTCTATTACCGAAGTCATTGCTGGAAAGAACTTAAGAAGGAACCTGAGGGGAAACAAAGGGGGAGGACAATGTCTGGCCACAAACCCCATTGATAGATGCTGGAGGTGTGACCCAAATTGGGCTGATAACCGCCAGAAACTAGCCGATTGTGTCCAAGGGTTCGGCAGAAACACCCGTGGAGGTAAAGGCGGTCCAATTTACGTTGTCACCGATCCTTCTGACGATGAATTGATGGACCCCAAACCCGGCACACTCCGTTATGCAGTCACACGTAATGGACCCCTTTGGATCACATTCGCTCACAACATGCTTATCACACTACAACAAGAACTTATCATGAATAGTGACAAGACAATTGATGGTAGAGGAGTTGATGTTTACATTGCCAATGGTGCTGGTATTACTGTACAATTTGTTAAGAATATTATCATCCATGGAATTAAGATTTACAACATTCAAGTACGCGAAGGTGGTACGATTAGAGATTCTGAGACCCATTATGGTTTAAGGACTAGGAGTGATGGTGATGGTATTTCCATATTTGGTTCTAGTAATATTTGGATTGATCATGTCTCCATGAAAAATTGTACTGATGGTTTAATTGATGCAATCATGGGATCTACTGCTATTACCATTTCTAACAGTCACTTCACTGACCACAATGAGGTTATGCTTTTTGGTGCTAATGACAATCATAAAGAAGACAAGATCATGCAAATCACATTAGCATTCAACCACTTTGGAAAAAGATTAGTACAAAGGATGCCAAGGGCAAGATTTGGTTTTGTCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCTCGAACCCTACAATTATCAGTGAGGGTAACAGATTCATTGGCCCAGAAAACAAAATGGTAGGTAAAGACCTTATTAATTCTAAAGAAGTAACAAAGAGAGAATACACCGATGAAAGTATATGGAAAAGCTGGCAATGGAGATCAATCAATGACGAATTTTTGAGCGATGCTTACTTTATTCAATCTGGACCAGAGCTAAAGGACAGACCATTTTCAAGGCAAGACATGATAACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACACGATTTGCCGGAAACCTACAATGCATTGTGGGTAAACCTTGTTAG 1308 0.4029 MNASELETEKFWKEERPEFDQYWEERSVEAKEFNQKAYFPDPFEVSGNLTASITEVIAGKNLRRNLRGNKGGGQCLATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDDELMDPKPGTLRYAVTRNGPLWITFAHNMLITLQQELIMNSDKTIDGRGVDVYIANGAGITVQFVKNIIIHGIKIYNIQVREGGTIRDSETHYGLRTRSDGDGISIFGSSNIWIDHVSMKNCTDGLIDAIMGSTAITISNSHFTDHNEVMLFGANDNHKEDKIMQITLAFNHFGKRLVQRMPRARFGFVHCVNNDYTHWEMYAIGGSSNPTIISEGNRFIGPENKMVGKDLINSKEVTKREYTDESIWKSWQWRSINDEFLSDAYFIQSGPELKDRPFSRQDMITAKPGSYVGRLTRFAGNLQCIVGKPC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1283 435 SMART amb_all 153 350 IPR002022 -
Tpr7g1283 435 Pfam Pectate lyase, N terminus 18 66 IPR007524 GO:0030570
Tpr7g1283 435 PANTHER PECTATE LYASE 1 435 - -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 101 118 IPR018082 -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 125 150 IPR018082 -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 161 177 IPR018082 -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 225 246 IPR018082 -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Tpr7g1283 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Tpr7g1283 435 Pfam Pectate lyase 162 344 IPR002022 -
Tpr7g1283 435 Gene3D - 78 428 IPR012334 -
Tpr7g1283 435 PANTHER PECTATE LYASE 18-RELATED 1 435 IPR045032 GO:0030570
Tpr7g1283 435 SUPERFAMILY Pectin lyase-like 79 425 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1283 Tpr-Chr7 13592119 13594150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1283 19 435 Polysaccharide Lyase AT1G14420 58.199 1.39e-180 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1283 K01728 - gmx:100798579 657.521