LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr7g1278	ATGTTTCACACTCCGTTTCGTTTACTTAATTTTCCCTGCACAAAACCTCCACATCTAAACATTCATATCTTGCTTTCCCTTCGTTCACCAACCATCCTTTGCTCATTCAATGAAGATTCCTTTTCTATCCCTAAATCAACCCAGTTTGGTTACAGTCCTCCAGAGGATCTATTTGGGCTAGAGGTGGAACTCAAACCAAGGAAAACTAACTCTCATATAAGAGAACCAAGGTCTTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATAGAAAGATCTAGATCAGACTGTCCAGAATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTCATATGGGAAGAATCAATTGATGAACGACCATGGGAGAGAGCTCAATCAATATCTCCACTCAAAGTGAAGGAAGACGATGAAGTTGACAAATTAGACATAAAGCTTGATGCAAAGAAAAAATCCAAGCGTGTTTACCAGTCACCTTCTCCTGAAGTTGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCAATTCTTCAGGCACAGAGAGTGATTGCTATTAAGAAAGCTAAGAGAACTGTTTCAGCAAGAATGCATGCTTCCAAAACTATGAAAGAGTTCTTTAGTGATCCAATAAACCGTCAAAAAAGGAGCATAGCCATGAAAGGAGTGAAATTCTACTGCCAAAACTGTGGACGTGAAGGACATAGGAGACACTATTGTCCAGAACTCAAGGATGGTTTGGTTGATCGGAGATTCACATGTAAGCTATGTGGTGAAAAAGGGCACAACCGAAGGACATGCATTAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACACCATCGATGTAAAATATGTCGACAATATGGCCATAACAGAAGGACATGCCCTCAAGTTATTTCGAATAAAGGAACGGACACAACATCTCAAAGAATATACAAATGTCGATTGTGCCAGAAAGAGGGACACAATATTAGAACATGTCCTAGAAGAATAGTTGGTACTGAAAATTCTCAAAAGTAA	1146	0.3979	MFHTPFRLLNFPCTKPPHLNIHILLSLRSPTILCSFNEDSFSIPKSTQFGYSPPEDLFGLEVELKPRKTNSHIREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPECNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKEDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPILQAQRVIAIKKAKRTVSARMHASKTMKEFFSDPINRQKRSIAMKGVKFYCQNCGREGHRRHYCPELKDGLVDRRFTCKLCGEKGHNRRTCIKLRISHSDGRVIKHHRCKICRQYGHNRRTCPQVISNKGTDTTSQRIYKCRLCQKEGHNIRTCPRRIVGTENSQK*	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr7g1278	381	Gene3D	-	319	378	-	-
	Tpr7g1278	381	PANTHER	ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN	44	373	-	-
	Tpr7g1278	381	Gene3D	-	262	309	-	-
	Tpr7g1278	381	ProSiteProfiles	Zinc finger CCHC-type profile.	266	281	IPR001878	GO:0003676\|GO:0008270
	Tpr7g1278	381	PANTHER	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	44	373	-	-
	Tpr7g1278	381	SUPERFAMILY	Retrovirus zinc finger-like domains	263	308	IPR036875	GO:0003676\|GO:0008270
	Tpr7g1278	381	SUPERFAMILY	Retrovirus zinc finger-like domains	317	372	IPR036875	GO:0003676\|GO:0008270
	Tpr7g1278	381	SMART	c2hcfinal6	323	339	IPR001878	GO:0003676\|GO:0008270
	Tpr7g1278	381	SMART	c2hcfinal6	355	371	IPR001878	GO:0003676\|GO:0008270
	Tpr7g1278	381	SMART	c2hcfinal6	292	308	IPR001878	GO:0003676\|GO:0008270
	Tpr7g1278	381	SMART	c2hcfinal6	265	281	IPR001878	GO:0003676\|GO:0008270
	Tpr7g1278	381	Pfam	Zinc knuckle	354	370	IPR025829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr7g1278	Tpr-Chr7	13525405	13531645	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr7g1278	48	379	C2H2 Transcription Factor Family	AT5G20220	63.824	6.59e-158	448

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr7g1278	-		-	cam:101493936	605.134