Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1249 ATGCCGAGATCACTCAACATTTTTTTATTTTTTCTTTGTTTGGCGGTCATCACGCCTACAATGAATGCCAGTGAATTAGAGACTGAGAAATTTTGGAAGGAAGAAAGACCTGAGTTTGATCAATATTGGGAGGAAAGGTCTGTAGAAGCAAAAGAATTCAATCAAAAAGCTTATTTCCCTGATCCTTTCGAAGTCTCTGGCAACCTAACTGCTTCTATTACCGAAGTCATTGCTGGAAAGAACTTAAGAAGGAACCTGAGGGGAAACAAAGGGGGAGGACAATGTCTGGCCACAAACCCCATTGATAGATGCTGGAGGTGTGACCCAAATTGGGCTGATAACCGCCAGAAACTAGCCGATTGTGTCCAAGGGTTCGGCAGAAACACCCGTGGAGGTAAAGGCGGTCCAATTTACGTTGTCACCGATCCTTCTGACGATGAATTGATGGACCCCAAACCCGGCACACTCCGTTATGCAGTCACACGTAATGGACCCCTTTGGATCACATTCGCTCACAGCATGCTGATCACACTACAACAAGAACTTATCATGAATAGTGACAAGACAATTGATGGTAGAGGAGTTGATGTTTACATTGCCAATGGTGCTGGTATTACTGTTCAATTTGTTAAGAATATTATCATCCATGGAATTAAGATTTACAACATTCAAGTACGTGAAGGTGGTACGATTAGAGATTCTGAGACCCATTATGGTTTAAGGACTAGGAGTGATGGTGATGGTATTTCCATATTTGGTTCTAGTAATATTTGGATTGATCATGTCTCCATGAAAAATTGTACTGATGGTTTAATTGATGCAATCATGGGATCTACTGCTATTACCATTTCTAACAGTCACTTCACTGACCACAATGAGGTTATGCTTTTTGGTGCTAATGACAATCATAAAGAAGACAAGATCATGCAAATCACATTAGCATTCAACCACTTTGGAAAAAGATTAGTACAAAGGATGCCAAGGGCAAGATTTGGTTTTATCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCTCGAACCCTACAATTATCAGTGAGGGTAACAGATTCATTGGCCCAGAAAACAAAATGGTAGGTAAAGACCTTATTAATTCTAAAGAAGTAACAAAGAGAGAATACACCGATGAAAGTATATGGAAAAGCTGGCAATGGAGATCAATCAATGACGAATTTTTGAGCGATGCTTACTTTATTCAATCTGGACCAGAGCTAAAGGACAGACCATTTTCAAGGCAAGACATGATAACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACACGATTTGCCGGAAACCTACAATGCATTGTGGGTAAACCTTGTTAG 1368 0.402 MPRSLNIFLFFLCLAVITPTMNASELETEKFWKEERPEFDQYWEERSVEAKEFNQKAYFPDPFEVSGNLTASITEVIAGKNLRRNLRGNKGGGQCLATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDDELMDPKPGTLRYAVTRNGPLWITFAHSMLITLQQELIMNSDKTIDGRGVDVYIANGAGITVQFVKNIIIHGIKIYNIQVREGGTIRDSETHYGLRTRSDGDGISIFGSSNIWIDHVSMKNCTDGLIDAIMGSTAITISNSHFTDHNEVMLFGANDNHKEDKIMQITLAFNHFGKRLVQRMPRARFGFIHCVNNDYTHWEMYAIGGSSNPTIISEGNRFIGPENKMVGKDLINSKEVTKREYTDESIWKSWQWRSINDEFLSDAYFIQSGPELKDRPFSRQDMITAKPGSYVGRLTRFAGNLQCIVGKPC* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1249 455 Pfam Pectate lyase 182 364 IPR002022 -
Tpr7g1249 455 SMART amb_all 173 370 IPR002022 -
Tpr7g1249 455 SUPERFAMILY Pectin lyase-like 99 445 IPR011050 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Tpr7g1249 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Tpr7g1249 455 PANTHER PECTATE LYASE 4 455 - -
Tpr7g1249 455 PANTHER PECTATE LYASE 18-RELATED 4 455 IPR045032 GO:0030570
Tpr7g1249 455 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Tpr7g1249 455 Gene3D - 98 448 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1249 Tpr-Chr7 12959530 12961987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1249 7 455 Polysaccharide Lyase AT1G14420 55.794 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1249 K01728 - gmx:100798579 669.077