Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1243 ATGTCACATTTGCAGTTACAGCTACACTCACAAGCACCACCATCACTCTTTTCATCATCTCTTTCTTCCCTCAAGTTTTTCTCAAACAAAAACTCTTTCTCTCCAACAAACTCTCTTCCTTTCAAACCCCTCACTATCAGATGCCGCCACTCTGACGTCTTCGAAACCAGAACCAACGTTTCTTCACCAAACCCTAACCCAGTTGGAGCTTTGCCACCTAGGGTTTATGTTGGTCATTCCATTTATAAGGGGAAGGCTGCTCTCACTATCACTCCAAGACCACCGGAATTCGCACCTTTGGATTCAGGGGCATATAAGATAACTAGGGATGGTTATGTGCTGCTTCAGTTTGCGCCCTCTCTTGGACCACGACAATATGATTGGAATAGTAAACAGGTGTTCTCTTTATCTGTGGCCGAAATGGGAGGTGTGATTAGCCTTGGTGGAAGGGAAAGCTGTGAATTTTTTCATGATCCTTTTATGGGAAAAAGTGATGAAGGCAAAGTCAGGAAAGTTTTGAAGGTTGAGCCTCTCCCGGATGGTTCTGGTTTCTTCTTTAACCTCAATGTTCAAAACAAGATTATAAATGCGGATGAAAGCATCAATATCCCTATATCAAAAGCAGAGTTGGCAGTTCTGCGCTCAATTTTCAAGTATATTATGCCGTACCTTCTAGGTTGGCATACCTTTGCAAACTCCATAAATCCGGAGTGTTCTGCCGTGGCGAACAATGCTAATCCGACATATGGAGGAGACTATGAATGGAGCAGATAG 774 0.4341 MSHLQLQLHSQAPPSLFSSSLSSLKFFSNKNSFSPTNSLPFKPLTIRCRHSDVFETRTNVSSPNPNPVGALPPRVYVGHSIYKGKAALTITPRPPEFAPLDSGAYKITRDGYVLLQFAPSLGPRQYDWNSKQVFSLSVAEMGGVISLGGRESCEFFHDPFMGKSDEGKVRKVLKVEPLPDGSGFFFNLNVQNKIINADESINIPISKAELAVLRSIFKYIMPYLLGWHTFANSINPECSAVANNANPTYGGDYEWSR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1243 257 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 54 257 - -
Tpr7g1243 257 SUPERFAMILY ssDNA-binding transcriptional regulator domain 73 257 IPR009044 GO:0003677|GO:0006355
Tpr7g1243 257 Pfam Whirly transcription factor 81 216 IPR013742 GO:0003697|GO:0006355|GO:0006952
Tpr7g1243 257 Gene3D Transcriptional Coactivator Pc4; Chain A 70 245 IPR009044 GO:0003677|GO:0006355
Tpr7g1243 257 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 54 257 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1243 Tpr-Chr7 12894919 12901609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1243 42 257 Whirly Transcription Factor Family AT1G14410 67.742 1.23e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Tpr7g1243 Whirly 2.7e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1243 - - gmx:100789252 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1243 7 12894919 12901609 Tpr7g1243 7 12894919 12901609 ECH