Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1232 ATGTCTAGTAGAAGATCTCGTTCGAGACAATCCGGTGTTTCCACTGAAATTTCTGATGCTCAAATTAATGATTTGGTTACCAAGTTACAACAACTTATCCCTGAACTTGCAAGGCGTTCCAACAAGGTTTCAGCTGCTAAAGTGTTACAAGAGACTTGCAATTACATCAAAAACTTGCATAGAGAGGTTGATGATCTAAGCGACCGATTGTCACAACTTTTGGACACCATAGACCCTAACAGTGCTCAAGCAGCTATCATTAGAAGCTTACTTATGTGA 279 0.3978 MSSRRSRSRQSGVSTEISDAQINDLVTKLQQLIPELARRSNKVSAAKVLQETCNYIKNLHREVDDLSDRLSQLLDTIDPNSAQAAIIRSLLM* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1232 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 83 IPR036638 GO:0046983
Tpr7g1232 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Tpr7g1232 92 CDD bHLH_AtPRE_like 17 76 - -
Tpr7g1232 92 Coils Coil 56 76 - -
Tpr7g1232 92 Gene3D - 19 84 IPR036638 GO:0046983
Tpr7g1232 92 PANTHER TRANSCRIPTION FACTOR PRE6 1 92 - -
Tpr7g1232 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Tpr7g1232 92 Pfam Helix-loop-helix DNA-binding domain 21 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1232 Tpr-Chr7 12712876 12714696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1232 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.213 7.61e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr7g1232 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1232 - - gmx:100791371 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1232 7 12712876 12714696 Tpr7g1232 7 12712876 12714696 ECH
Tpr7g1232 7 12712876 12714696 Tpr3g4389 3 48815000 48817066 ECH
Tpr7g1232 7 12712876 12714696 Tpr6g3168 6 34241381 34242890 ECH
Tpr7g1232 7 12712876 12714696 Tpr2g0357 2 4282403 4286134 ECH