Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1229 ATGGCTGATCTTCACAAAACTGGTGTCGGCGACAGTAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGTTCTTATCTACTAAAGTATGGACGAAGAGGGAGGCCAAAGTTTTGTCCTTTTAAGCTTTCCAATGATGAGTCGCTACTCATATGGTACTCTGACAAGGAAGAAAAACAAATTAAGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGACCTGAAAAGGAGTATCAGTCATTTTCTCTTATATACAACAATGATAGGTCCCTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAGATCTGGTTTGCCGGTCTGAGATCATTAGTTACCCGAGGTAACTATCGCAAGTGGCGATTCGAACCAAGACCTGAAACTCTGTGTTCTGATAGTCCAAAGTCTAGCAGAAGATCCACTCCATCATTTCCACCATTTGTCTGTGACAATAACTTAATCTTCTTTTTTTCTTTTCAAAATTCTTCGCCAAATAAATGGGTAAAGGCTTTCTCTGAAATAATTTCATACACTGCACCTAGCAAGAGCTCCAGTCAAGCCGAATCAATTACCAATTCCTCTATTTCCTCCTCCGGGTCTGTGGATAACTCGAGCAATCGAAATTCTGCATCTGAGGCAATTCGAATCAGTTTATCCAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTGTCATGAAGATATTGATGCTTTAGGAGATGTTTTTATTTGGGGAGAAGGTATCAATGATGGAATTCTTGGTGGTGGCCTGCATAGGGTTGGAAACTTATCTATTTCAGAGATGGATGCATTCCTTCCCAAGGCACTGGAATCAAAAGTGGTTCTAGATGTTCATAGTATTGGTTGTGGCTATAAACATGCTGTTCTAGTTACCAAGCAGGGAGAAATATTTAGCTGGGGCGAGGAGTCAGGAGGCAGGCTTGGACATGGTGCAGAAGTGGATGTTTTTCACCCTAAGCACATTGATAGTCTTAATGGCACGAACATTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACTTGTTCTGGGGATCTTTATACCTGGGGTGATGGTATGCACAATTCTGGGTTACTTGGGCATGGAAATGAAGTTAGTCAATGGATTCCTAAGAAAGTAAGTGGTGCATTGGAAGGATTACGTGTATCATATGTGTCCTGCGGACCTTGGCACACAGCTATTGTTACATCAGCCGGGCAGTTGTTTACCTTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGCAGCTCAAATATTCCCCGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACTAGGGTTTCATGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCCGTGGATTCTTCTACGCAGTCATCTATTGGAAGACTGTTCACCTGGGGTGATGGGGATAAAGGCCAACTTGGATATGTTGATATGAAACCTAGACTGGTTCCTTTGTGTGTAATTGCACTGGCTAATGAAGACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGCTGCATTGTCAATGTCGGGACATGTATATACAATGGGCAGTACAGCTTACGGACAACTTGGTTGTCCTGCAGCAAGTGGGAAGGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCCTGTGGTTCGTATCATGTTGCAGTCCTGACTTCCAAGTCAGAGGTTTACACATGGGGAAAAGGTTTAAATGGGCAATTAGGTCATGGTGACAACGGTCACAGGAATAAACCCACACTTGTCGAGTTTTTAAAAGATAAGCAAGTGAAGAGTGTGTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGATACCGAGTATTAATCATTCAGCATGTTCAGGCTGTCATAATCCTTTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAAATCATGCACTAGCAAGAAATCTATGAAGGCTTCCCTTGCTCCAAGTTCCAACAAGACATATCGTGTTTGTGATGACTGTTATTATAGACTTAGGAAAGCTGCTGAATCAGTATCCTCGCAAACACCTAGCTGGAGAAGTGTCAGTTTGCATGACAATAAGGCCGCTAAAATACAGGGATCACTATTAAGACTTTCATCGTTTGGTTCTGTTGTTCAATCAGAAAGCAGTCATTCAAAGCTTCCAGATTCTCACGATAGCCATATTTTTCCAGCTTTTAATGGAAAACTACAGCTGGGGGGTTTTGTTATTTCAAAATCATCAAACTCTCTTTCTGGGGAATCGAGGAAATATGTGTCTGTTTCTGAGCTTGCTACAAGAATTTCTTGTCAGTCAACCTCTCCAGTTTCATCAAAGTCAAGCCCACGGCAATCTTGTGAAGATATTATACATGATGATTTAAAACACAGAAATGATATTCTAAGTCATGAAGTTATAAGTTTAAAAGCACAGGTTGAGGATCTTACTCGGAAGTCAAAAAGTCTTGAGTCTGAACTGGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAAGTTATAAAGTCATTGACAGCTCAGTTGAAAGAAATGATGCAAAGATTACCAGAAGGACATAATGCCGACTCAAGCACAGATTCCTATGTTGAAACCAGTAATAGGATTGTTGATCAATCCTTAGATGAGAGTCATTTAACAAACATTATCACTGCCAAAAATGAACGCAGTAGCGACACAGAAAATATGGTATTTCCTAATGGTACCACAACACAAAGTGGAAAGGCAGAATTGGTGGTGCAAGATGAACCAGGTGTGTACGTAAGTTTGTCCTCCCTTCCAGGTGGTGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAGGAAGCTGAAAAGTGGTGGGCCGAAAATGGTACTAAAGTATTGGAACGGCACAATATAGTTGCCTTGTAG 3063 0.4136 MADLHKTGVGDSRDIEQAITSLKKGSYLLKYGRRGRPKFCPFKLSNDESLLIWYSDKEEKQIKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNNDRSLDLICKDKEEAEIWFAGLRSLVTRGNYRKWRFEPRPETLCSDSPKSSRRSTPSFPPFVCDNNLIFFFSFQNSSPNKWVKAFSEIISYTAPSKSSSQAESITNSSISSSGSVDNSSNRNSASEAIRISLSSAVSSSSQGSCHEDIDALGDVFIWGEGINDGILGGGLHRVGNLSISEMDAFLPKALESKVVLDVHSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGAEVDVFHPKHIDSLNGTNIELVACGEYHTCAVTCSGDLYTWGDGMHNSGLLGHGNEVSQWIPKKVSGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSSNIPREVETLKGLRTTRVSCGVWHTAAVVEVINESVDSSTQSSIGRLFTWGDGDKGQLGYVDMKPRLVPLCVIALANEDICRVACGHSLTAALSMSGHVYTMGSTAYGQLGCPAASGKVPTRVEDKIADSFIEDIACGSYHVAVLTSKSEVYTWGKGLNGQLGHGDNGHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSINHSACSGCHNPFNFRRKRHNCYNCGLVFCKSCTSKKSMKASLAPSSNKTYRVCDDCYYRLRKAAESVSSQTPSWRSVSLHDNKAAKIQGSLLRLSSFGSVVQSESSHSKLPDSHDSHIFPAFNGKLQLGGFVISKSSNSLSGESRKYVSVSELATRISCQSTSPVSSKSSPRQSCEDIIHDDLKHRNDILSHEVISLKAQVEDLTRKSKSLESELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMMQRLPEGHNADSSTDSYVETSNRIVDQSLDESHLTNIITAKNERSSDTENMVFPNGTTTQSGKAELVVQDEPGVYVSLSSLPGGGNELKRVRFSRRHFTEEEAEKWWAENGTKVLERHNIVAL* 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1229 1020 ProSiteProfiles PH domain profile. 21 124 IPR001849 -
Tpr7g1229 1020 SMART fyve_4 635 706 IPR000306 GO:0046872
Tpr7g1229 1020 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 456 466 IPR000408 -
Tpr7g1229 1020 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 643 705 IPR017455 -
Tpr7g1229 1020 SUPERFAMILY RCC1/BLIP-II 247 640 IPR009091 -
Tpr7g1229 1020 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 483 534 IPR000408 -
Tpr7g1229 1020 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 363 417 IPR000408 -
Tpr7g1229 1020 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 297 307 IPR000408 -
Tpr7g1229 1020 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 1014 - -
Tpr7g1229 1020 Coils Coil 880 900 - -
Tpr7g1229 1020 Pfam Transcription factor regulating root and shoot growth via Pin3 961 1015 IPR013591 -
Tpr7g1229 1020 Coils Coil 831 872 - -
Tpr7g1229 1020 Gene3D - 13 130 IPR011993 -
Tpr7g1229 1020 CDD PH_PLC_plant-like 13 124 - -
Tpr7g1229 1020 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1014 - -
Tpr7g1229 1020 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 535 586 IPR000408 -
Tpr7g1229 1020 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 311 362 IPR000408 -
Tpr7g1229 1020 Pfam FYVE zinc finger 639 705 IPR000306 GO:0046872
Tpr7g1229 1020 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 249 310 IPR000408 -
Tpr7g1229 1020 Gene3D - 374 475 IPR009091 -
Tpr7g1229 1020 Gene3D - 177 373 IPR009091 -
Tpr7g1229 1020 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 418 469 IPR000408 -
Tpr7g1229 1020 Gene3D - 476 646 IPR009091 -
Tpr7g1229 1020 PRINTS Chromosome condensation regulator RCC1 signature 313 329 IPR000408 -
Tpr7g1229 1020 PRINTS Chromosome condensation regulator RCC1 signature 363 379 IPR000408 -
Tpr7g1229 1020 PRINTS Chromosome condensation regulator RCC1 signature 404 420 IPR000408 -
Tpr7g1229 1020 PRINTS Chromosome condensation regulator RCC1 signature 420 434 IPR000408 -
Tpr7g1229 1020 PRINTS Chromosome condensation regulator RCC1 signature 524 542 IPR000408 -
Tpr7g1229 1020 PRINTS Chromosome condensation regulator RCC1 signature 582 603 IPR000408 -
Tpr7g1229 1020 Pfam Regulator of chromosome condensation (RCC1) repeat 534 583 IPR000408 -
Tpr7g1229 1020 Pfam Regulator of chromosome condensation (RCC1) repeat 311 359 IPR000408 -
Tpr7g1229 1020 Pfam Regulator of chromosome condensation (RCC1) repeat 588 635 IPR000408 -
Tpr7g1229 1020 Pfam Regulator of chromosome condensation (RCC1) repeat 362 413 IPR000408 -
Tpr7g1229 1020 Pfam Regulator of chromosome condensation (RCC1) repeat 418 466 IPR000408 -
Tpr7g1229 1020 Pfam Regulator of chromosome condensation (RCC1) repeat 483 531 IPR000408 -
Tpr7g1229 1020 Pfam Transcription factor BRX N-terminal domain 875 903 IPR027988 -
Tpr7g1229 1020 SUPERFAMILY PH domain-like 14 123 - -
Tpr7g1229 1020 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 587 638 IPR000408 -
Tpr7g1229 1020 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 716 IPR013083 -
Tpr7g1229 1020 SUPERFAMILY FYVE/PHD zinc finger 639 717 IPR011011 -
Tpr7g1229 1020 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Tpr7g1229 1020 ProSiteProfiles BRX domain profile. 961 1016 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1229 Tpr-Chr7 12634105 12650588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1229 959 1017 Major Intrinsic Protein MIP AT1G31880 49.153 4.52e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1229 - - lang:109355968 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1229 7 12634105 12650588 Tpr7g1229 7 12634105 12650588 ECH