Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1211 ATGACAAACACACTTTTCACTTTTGTTTTATTTCTCTTCTCTCTTTTCATGCCTACCCTCATTTCCTCTTCACCTCTTCAAAACCCTGAATTGGTAGTCCAAGAAGTAAATAGGAAAATCAATGCCTCTGTAGCAAGGAGGAATTTAGGATACCTGTCTTGTGGGAGTGGAAATCCTATTGATGATTGCTGGAGGTGTGACTCCAAGTGGGAGAAGAACAGACAAAGACTAGCAGATTGTGCAATTGGGTTCGGGAAGAACGCCATTGGTGGAAGAGACGGTAAAATCTACATTGTAAATGATGCCAACGATGACAATCCGGTGAACCCAAAGCCGGGAACACTCCGTCACGCCGTGATCCAAGTTGAACCATTATGGATAATCTTTGCTAGAGACATGGTGATCAAGTTAAAAGAAGAATTAATCATGAATTCTTTCAAAACAATTGATGGTAGAGGCGCGAGTGTGCACATTGCTGGTGGTCCATGCATTACCATACAATATGTCACCAATATTATCATCCATGGAATAAATATACATGATTGTAAACAAGGTGGGAATGCTATGGTTAGGGACTCCCCGCGACATTTCGGGTGGAGGACTATATCGGACGGTGATGGTGTGTCCATTTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTAAAGATGGTTTGATTGATGCTATTCATGGATCAACGGCTATAACAATCTCTAACAATTACATGACACACCATGATAAAGTTATGTTGTTGGGTCATAGTGATTCTTATACTCAAGATAAGAATATGCAAGTCACAATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTAGTGAACAATGATTACACTCACTGGGAAATGTATGCTATCGGAGGAAGTGCTAATCCCACAATTAACAGTCAAGGAAACAGATTTGTTGCTCCTAATAACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCTGAGAGTAAATGGAAGCATTGGAATTGGAGATCAGAAGGAGACTTAATGGTAAATGGTGCATTTTTCACTGCATCAGGTGGTGGAGCTTCATCTAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTCGGTTCCATAACAATAGCAGCTGGTACACTTAATTGTAAGAAAGGTTCTCCTTGCTAG 1221 0.407 MTNTLFTFVLFLFSLFMPTLISSSPLQNPELVVQEVNRKINASVARRNLGYLSCGSGNPIDDCWRCDSKWEKNRQRLADCAIGFGKNAIGGRDGKIYIVNDANDDNPVNPKPGTLRHAVIQVEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNNRFSKEVTKYEDAAESKWKHWNWRSEGDLMVNGAFFTASGGGASSSYARASSLSARPSSLVGSITIAAGTLNCKKGSPC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1211 406 SMART amb_all 132 329 IPR002022 -
Tpr7g1211 406 Gene3D - 57 399 IPR012334 -
Tpr7g1211 406 PANTHER PECTATE LYASE 18-RELATED 7 403 IPR045032 GO:0030570
Tpr7g1211 406 SUPERFAMILY Pectin lyase-like 36 382 IPR011050 -
Tpr7g1211 406 Pfam Pectate lyase 139 323 IPR002022 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Tpr7g1211 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Tpr7g1211 406 PANTHER PECTATE LYASE 7 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1211 Tpr-Chr7 12390308 12392567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1211 1 406 Polysaccharide Lyase AT5G63180 77.506 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1211 K01728 - gmx:100101868 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0256 1 2144220 2150823 Tpr7g1211 7 12390308 12392567 ECH
Tpr7g1211 7 12390308 12392567 Tpr7g1211 7 12390308 12392567 ECH