Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1056 ATGTCTTTGAGTCCTCCAAGAGAAAGAATCAACGGCCAACGTAGAAACTTCCAACTCTACTGGTGCTTCCAATGCAACCGCACCGTCCGTGTCGCACCATATAACACCTCCGAATTAATATGTCCACGCTGCTTCGGTCAATTCATATGTGAAATCAACATACCAAGACCACGACTAGTGGTTGACTTCACCGCACACGATCCTTCCCCAGAAGCGCGTTTGTTAGAAGCACTTTCCCTAATGCTCGATCCACCCATCCGTCGCTTTAACACTGAAACCCAAACAGGACGCCCACGTCGTGGGCGTCCCACACAACAAGTTCCTGTACACCGTCACACAGGAGATCATCACCATCCTACACAAACACAACCCGAACCCGAACCCGAAATCCAACATCGTCCACGTACATGGGTAATTCTTCAACCAATTGATCCATCAAATTCAAACACGTTCCAACCGGTGATTACACGTGGACGACAAGGACCGATTCCACGTGGCATTGATGCTAGAGATTACTTTTTTGGTCCGGGATTTAACGAACTAATAGATCAGATAACAGAAAACGACCGGCAAGGACCACCACCGGTGCCAGAAAGAGGTATAAACGCGATTCCGACGGTGAAAATCGAAAGCAAAAATCTGAAAGAGAATTCGCATTGTCCTGTTTGTCAAGAAGAGTTTGAAATCGGCGGTGAAGCGAGGGAACTTCAGTGTAAACATATATATCATTCTGATTGTATTGTTCCATGGCTTAGACTTCATAATTCTTGTCCAATTTGCCGTCAAGAGATTACTGTTTCTTCTGATGAAGATGAGTGTGGTGAAGGTGATGGTGAAGATTCTAATCCAAGGCGGCACTCTTGTTGCATTCTTTAA 876 0.4566 MSLSPPRERINGQRRNFQLYWCFQCNRTVRVAPYNTSELICPRCFGQFICEINIPRPRLVVDFTAHDPSPEARLLEALSLMLDPPIRRFNTETQTGRPRRGRPTQQVPVHRHTGDHHHPTQTQPEPEPEIQHRPRTWVILQPIDPSNSNTFQPVITRGRQGPIPRGIDARDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELQCKHIYHSDCIVPWLRLHNSCPICRQEITVSSDEDECGEGDGEDSNPRRHSCCIL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1056 291 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Tpr7g1056 291 MobiDBLite consensus disorder prediction 89 130 - -
Tpr7g1056 291 Pfam Ring finger domain 219 261 IPR001841 -
Tpr7g1056 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 267 IPR013083 -
Tpr7g1056 291 SMART ring_2 220 260 IPR001841 -
Tpr7g1056 291 SUPERFAMILY RING/U-box 201 267 - -
Tpr7g1056 291 ProSiteProfiles Zinc finger RING-type profile. 220 261 IPR001841 -
Tpr7g1056 291 MobiDBLite consensus disorder prediction 109 130 - -
Tpr7g1056 291 PANTHER - 9 275 - -
Tpr7g1056 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1056 Tpr-Chr7 10178677 10180776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1056 192 291 C3H Transcription Factor Family AT1G68180 44.762 1.06e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1056 K11982 - gmx:100787399 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1056 7 10178677 10180776 Tpr7g1056 7 10178677 10180776 ECH