Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1054 ATGTCTGCTTCTGAGGATGGTGGCAACAAGGCAACGAAAGCTGGAGATCATGCCGCATATAGTCTTTTAAACAACCTCAGCAATGCGACAAATGATAGTAGTATTAAAGTGCGCATTGCTCGAATGTGGGACAATCTGCATGTATATGACAAAAAACAGTTAATTAGTATTGATATGGTGTTGATTGATGAAGAGTACAATTGTATCCATGCAACACTACCTAAGTCATTTGTAGCGGAGTTCAGGGGGAAAAAAGTGCAACGAGGAAAGATATATGTCATCACGAAATTTGAGGTGTCGGCCAATAAAAAAAGGTATGCGGTGGTTGAAAATAACTCTTCAATGTTGCATTTCAATGGTAACACCGAATTCGATGAGGAGTATGACAATGGCAGCATCCCTCCCCATGCTTTTGAATTTGTCAAGTATGCACATTTGGAGGCTCGCATTGACAAACCTATGTTGTCAGATATAATTGGCGTTATAGTTGATGTCAATCCAATTGAAGAAAGGAAAACTCCTGGTGGTAAAGTGGATATGTTGCCTATTCGACTGAAAGATATAAGTGGCAACACAATCAACGTCGCAATGTGGGGACAATATGCTACAATTTTTGAGGACACACTAAAGAGGAATTTGTGTGATGCTGCTGATCCTAATGTTACAGTCATCACATCCACTACGGCTAAGAGATATCAGGGAAATTTGTCTCTCAACTCATCAAGTTCAACAAATATTTATGTCAATATAGACATACCAGAAGCAGCTGAACTCATCCAGTCATTCAATATCAGGGAGTAA 801 0.3945 MSASEDGGNKATKAGDHAAYSLLNNLSNATNDSSIKVRIARMWDNLHVYDKKQLISIDMVLIDEEYNCIHATLPKSFVAEFRGKKVQRGKIYVITKFEVSANKKRYAVVENNSSMLHFNGNTEFDEEYDNGSIPPHAFEFVKYAHLEARIDKPMLSDIIGVIVDVNPIEERKTPGGKVDMLPIRLKDISGNTINVAMWGQYATIFEDTLKRNLCDAADPNVTVITSTTAKRYQGNLSLNSSSSTNIYVNIDIPEAAELIQSFNIRE* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1054 266 SUPERFAMILY Nucleic acid-binding proteins 21 124 IPR012340 -
Tpr7g1054 266 Gene3D - 19 126 IPR012340 -
Tpr7g1054 266 SUPERFAMILY Nucleic acid-binding proteins 138 264 IPR012340 -
Tpr7g1054 266 CDD RPA1_DBD_B_like 157 262 - -
Tpr7g1054 266 PANTHER REPLICATION FACTOR A 1, RFA1 26 263 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g1054 266 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 26 263 - -
Tpr7g1054 266 Pfam Replication protein A OB domain 150 248 IPR031657 -
Tpr7g1054 266 CDD RPA1_DBD_A_like 34 122 - -
Tpr7g1054 266 Gene3D - 131 266 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1054 Tpr-Chr7 10170454 10171912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1054 61 258 Core DNA Replication Machinery Family AT5G08020 29.703 1.99e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1054 - - mtr:MTR_4g070090 234.572