Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1053 ATGACTGGTGTGTATAACTGTGTTGCAACGGTGGATGAGATTTTGGAAAAAAATGGATGGTATTATGTCTCATGTCCTAAATGCAAAAAAAGTGCATCTGCGGCTAAAACAAACTTCACATGTGCTTTCTGTGAAGAAAGTGTGGATTATCCCGTTACAAGGTATCGTTTGGAGCTTCGTGTGAGGGACGCTACAGATTCTACTATATTTGTATTGTTTGATGACCTTGCTGAGCAAATTGCACAAATAAAATTGGTTGATCTAACCTCAGCTTTGGAGAATGAAACTGAAAATGTTGTAGCAATACCACATCAACTCCAAAGGATCGTTGGAACCACTCATATATTCCAAATTAAGATGAAGTCTTACTTTGAGGGTCGTGGAAGACAGAGTTTCACAGTGAATAGAATTGTGAAACCTACGGTGAAGGTTGTCCTCTAA 441 0.3878 MTGVYNCVATVDEILEKNGWYYVSCPKCKKSASAAKTNFTCAFCEESVDYPVTRYRLELRVRDATDSTIFVLFDDLAEQIAQIKLVDLTSALENETENVVAIPHQLQRIVGTTHIFQIKMKSYFEGRGRQSFTVNRIVKPTVKVVL* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1053 146 Gene3D - 2 144 IPR012340 -
Tpr7g1053 146 CDD RPA1_DBD_C 4 143 IPR013955 -
Tpr7g1053 146 PANTHER BNAC01G35430D PROTEIN 6 142 - -
Tpr7g1053 146 PANTHER REPLICATION FACTOR A 1, RFA1 6 142 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g1053 146 Pfam Replication factor-A C terminal domain 5 138 IPR013955 -
Tpr7g1053 146 SUPERFAMILY Nucleic acid-binding proteins 4 140 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1053 Tpr-Chr7 10169702 10170752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1053 21 140 Core DNA Replication Machinery Family AT5G08020 28.689 3.73e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1053 - K01808 mtr:MTR_4g070090 174.096