Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1004 ATGGCTATTTCTCACTCTTTCATTCCTTTGACCTTTTTCATATTGCTCTTCAAACAGGTCATAGCCGGCATTGATACAAATTGGTATGATGCTCACGCAACCTTCTATGGTGGTCCGTCAGGAGCTGGAACCATGCAGGGGGCTTGTGGTTATGGTGATCTCTACAAACAAGGATATGGACTTACAAACACAGCACTAAGCACAGCTCTATTCAATAACGGAGCTACTTGTGGTGCTTGTTTTCAGTTAGTTTGTGTGAACGATCCTCAATGGTGCATAAAGGGTGCAAGGCCAATCACGGTAACCGCAACAAATTTTTGTCCTCCAGATTACTCCAAAACCACTGATATTTGGTGTAATCCACCACAAAAACACTTTGACTTGAGTTATAAAATGTTCACTTCTATTGCCTACGAAAAAGGCGGTATCATACCAGTTAAATATCGACGTGTTTCATGTTTCAAAAGAGGGGGTGTAAGGTTTGAGATCAACGGAAACCATAATTTCTTGTTAGTTTTGGTGTTCAATGTTGCTAATGCTGGCGAAGTTTCTCGTGTTAGTGTCAAAGGATCTAAGACTGGCTGGATTCCCATGAAACGCAATTGGGGACAAAAGTGGGATTCTGGAGTTAATTTGGTAGGACAAGCTTTGTCATTTCAAGTTACTACAAGTGATGGAAAAACTTTGGAGTTTTATTCAGTTTCTCCTTACAACTGGCAATTTGGACAGACTTATGAGGGTCGGGGTAATTTTTAG 756 0.4087 MAISHSFIPLTFFILLFKQVIAGIDTNWYDAHATFYGGPSGAGTMQGACGYGDLYKQGYGLTNTALSTALFNNGATCGACFQLVCVNDPQWCIKGARPITVTATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYEKGGIIPVKYRRVSCFKRGGVRFEINGNHNFLLVLVFNVANAGEVSRVSVKGSKTGWIPMKRNWGQKWDSGVNLVGQALSFQVTTSDGKTLEFYSVSPYNWQFGQTYEGRGNF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1004 251 SUPERFAMILY Barwin-like endoglucanases 27 176 IPR036908 -
Tpr7g1004 251 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tpr7g1004 251 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Tpr7g1004 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tpr7g1004 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Tpr7g1004 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Tpr7g1004 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Tpr7g1004 251 Gene3D - 158 251 IPR036749 -
Tpr7g1004 251 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Tpr7g1004 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Tpr7g1004 251 PANTHER EXPANSIN-A21-RELATED 10 251 - -
Tpr7g1004 251 SMART dpbb_1 63 148 IPR007112 -
Tpr7g1004 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Tpr7g1004 251 PANTHER EXPANSIN-A15 10 251 IPR002963 GO:0009664
Tpr7g1004 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Tpr7g1004 251 Gene3D - 18 153 IPR036908 -
Tpr7g1004 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Tpr7g1004 251 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Tpr7g1004 251 Pfam Lytic transglycolase 64 148 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1004 Tpr-Chr7 9472767 9473826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1004 16 251 Expansin Gene Family AT5G39280 62.185 2.11e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g1004 - - zju:107415875 362.073