Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0995 ATGGCGCCTAGAAAAAGAAATTTGCATCAATGGAAACATCCATTCAATGATGATTATCCATTTGAAGTAGTATTGAATGGCTCATGGCAACCGGTAGAACTCATAAAAATTGAGTCAGGAATAACTACCTTACATTTCATGGATACTCAACAAATTCAGAGCCCTTTGTCATCAGATATTCGTATAAAATCAAGAAAAGCTACTTCATCAGATTGCTCCAACTTTTTAAGACCTCGAATTGACATATCAATGCTATTAGGGTATTGCTACAAAGATAATCCAGATCAATTTGGTCCTATTCCAATATGGATGGATGCAAGAATAAATTCTATACATAGACAACCTCACGAATCTGATCAATGTTCGTGCCAATTTTTTGTAAACTTCTATGATGATCAAGGTTCACTTGGTACAGAGTTAAAAACTCTTGATAAAGTGATTAATGCAATTGGAATAGATCAAATTTTCATCCTCCAAAGGCTTCAACATAATACCTGTGACGGCTTGTTAAAAAAGAATAACGGTATTGAAGTTAAGCCCTATAGATGGGATTCATCAGAAGATTGTTCTTCACTATCACAATCTAGATTACTCTTTGGAAAATTTTTAGCCGATCTTTCGTGGTTTGTTACTACATCTTTTTTAAAGAAGGTTTCATTTCGGATAAGGTCTGCTCAAAACAAGATTGTGTACCAAGTTAAGGGAAATGATACTGATATTGTTAGTCCTTTTCTTATAGATGTTGTGAACTTCAAATCAAAAGACGGATCAATAGTACCAATTGTTTGTGAATTTGATTTGTTTCATGATTATGATGGTAAAGAAGATGAAGCGTCATCAGTTCTGTCTAATGAAATGGAAGTCTTACGTCGTTCAAGACGTAGGACTGTACAACCCAAACGTTATGTAGGTTGTGATGTTGAGAAGTTGGAGGTGGGAAATTTTCGAACGTGGCCGTATAAAAGACCAACTTATGTGACAGATGATGAAAACTCTTCAGATTCAGAAGAGGATGATGGAAAAAGTGATAAAAACTCTTCCAAAAATGATCATTTGACTACGAATGATGCTGATGAGTTGAATTTGGACCCTTGTAGTATTCAGACTACCATGTCAAATATTAATGATGTAGAAGTTGATGATAGAGTTTCTTTGGGGGATTTTTATAGTTTCGGTAAAGAGATTCTTAAGAGGAAGCGATTCCATGGTTCAGATGATATGGATTATGAAAACAAATGGGAAGGGATACATTTCAAAAAAGGAGCTCAAACGAAAAGATATCATTCCATTTTTACAAGTAGAGAACATCTTCATGAAGAACAAGATCATAAAGGCGATAGACCGTTAAATGTTGATGTCTGCAAGGAAATGATAGATACTTACATGAAGAATTTTCATAGTCTACCAACGGAAGACGAGCCAACTATTAATGAAGAAACAAACAAGTTGGAGCAGAAGTTTGAAAAAAATGTATCGAAAATCGAGGATGAGGAAGAAAATCCTGATGATTTGGCTGGCTTGTGGGAAGAAATGGATTCAGCTTTGATATCAAGTAATCTTCTTGATGGAACTGAGGGTTCAAATGCGGAGGTTTTAGTTGATTCCAATAAAGAATCCACAGAGATTTGTGAACATGATTATAAATTGGATGAAGAAATTGGAATATACTGCCTTCAATGTGGCTTTGTGAAAACTGAGATACGACACATTTCTGAGCACGTTATGGAAAGTCCAAGACGGTACAGAGAGGCGAAACAATGCATTGAAGAAGATAAGGAACATAAATCAGAGCAAAAAGTTGATGAAGATGTTAATAGTGATTTGTTCTCAACTCATGCTACTGATCCTGATGAACCAATATCTATAGAAAATGACAGTGTTTGGGAATTGATTCCAGAACTTGAAAAAAAAATGCATGCACACCAGAAAAAGGCTTTTGAATTTCTTTGGCAAAACATTTCTGGCTCTATGGAACCATCACTCATGAAGGAAAAATCGAAAACAAATGGTGGTTGTGTTATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCATTATTTCTTTTCTTGTAAGTTACTTGAAGTTATTTCCAGGGAAGAGACCATTAGTCCTTGCTCCAAAAACCACACTCTACACATGGCGCAAAGAGTTCAAAAAATGGAAGGCTCCTATACCGGTGTATCTTATCCATGGCCGTCGAACTTGGAAAGGTTCAACAACACAAAAATCAATGGTTCTTCCTGGCATTCCAAGACCTTCCAGTAATGTCAAACATGTTATAGATTGTCTTAGCAAGATTCAAAAATGGAATTCACACCCTAGTGTTCTTGTCATGGGTTATTCTTCATTTTTAACATTAATGAGATCAGAAGATACAAAATTTGCACACCGAAAATACATGGTTAAAGCATTGAAAGAAAGCCCTGGAATCTTGATACTTGACGAAGGACACAATCCTAGAAGCACTAAATCAAGATTGAGGAAATGTTTAATGAAACTTCCAACAGAATTGAGGATATTACTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATATTTCAACACACTTTGTTTAGCTAGACCGAAATTTGTCCATGAAGTTCTACAAGAGCTAGATTCTAAATATCGAAGGAGAGACAAGGTAGCGAAGAAAGCACGACATTTGCTCGAGGCGCGGGCGAGGAAATTCTTCTTGGACAACATTGAAAAGAAAGTTAACTCAGACTTTGATGAGGAGAGGATGCAGGGTCTATATGTGCTGAAAAAAATTACTTCAGGTTTTATCGATGTTTACGACAGTGGAAATTCTTCTGATACTCTTCCTGGTTTACAAATCTATACATTGCTCATGAATACATCCGATGAACAACATGAGATTATACAGAAACTTCAGAAGAAAATGGCCGAGTGCACGGGTTACCCTCTTGAAGTTGAGCTTTTGATAACACTTGCATCGATACATCCATGGCTGATCAAAACAGCAGCAGCATGTGCAGCTAAATTTTTCGCCGAGGAAGAATTTGAGAAACTAGAAGAATTGAAGTTTGATTTGAGAAAAGGTTCGAAAGTGAGATTTGTTCTGAGCCTAGTCTCACGTGTAGTGAAAAAGGAAAAGGTTCTTATCTTTTGTCACAACCTTGCACCAGTGAGGTTTTTTATAGAGTTATTTGAAAAGTATTTTCAGTGGCAAAATGGTAAAGAGATTCTTTTACTGACCGGTGAACAAGATTTATTTGAAAGAGGTAAAGTGATAGATAAATTTGAAGATCCTCGCGGCAATTCGAAGATACTTCTTGCTTCAATCAATGCTTGTGCTGAAGGGATTAGTTTAACAGCAGCTTCTAGAGTGATTTTTTTGGATTCTGAGTGGAATCCTTCAAAAACAAAGCAAGCTATTGCGCGCGCTTTTCGTCCAGGTCAGCAGAAAATGGTTTATGTGTATCAGTTATTGATGAGCGGGTCGATGGAGGAAGATAAGCATAGAAGAACTAGTTGGAAAGAGTGGGTTTCTTGCATGATTTTCAGTGAGGAATTTGTGGAAGATCCTTCTAAATGGCAAGCAGAGAAGATTGAAGATAATATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTTTGAAGAAAGAAAAGGATTCAACAAGCAAATCAAAGATCACTGTTTAG 3684 0.3632 MAPRKRNLHQWKHPFNDDYPFEVVLNGSWQPVELIKIESGITTLHFMDTQQIQSPLSSDIRIKSRKATSSDCSNFLRPRIDISMLLGYCYKDNPDQFGPIPIWMDARINSIHRQPHESDQCSCQFFVNFYDDQGSLGTELKTLDKVINAIGIDQIFILQRLQHNTCDGLLKKNNGIEVKPYRWDSSEDCSSLSQSRLLFGKFLADLSWFVTTSFLKKVSFRIRSAQNKIVYQVKGNDTDIVSPFLIDVVNFKSKDGSIVPIVCEFDLFHDYDGKEDEASSVLSNEMEVLRRSRRRTVQPKRYVGCDVEKLEVGNFRTWPYKRPTYVTDDENSSDSEEDDGKSDKNSSKNDHLTTNDADELNLDPCSIQTTMSNINDVEVDDRVSLGDFYSFGKEILKRKRFHGSDDMDYENKWEGIHFKKGAQTKRYHSIFTSREHLHEEQDHKGDRPLNVDVCKEMIDTYMKNFHSLPTEDEPTINEETNKLEQKFEKNVSKIEDEEENPDDLAGLWEEMDSALISSNLLDGTEGSNAEVLVDSNKESTEICEHDYKLDEEIGIYCLQCGFVKTEIRHISEHVMESPRRYREAKQCIEEDKEHKSEQKVDEDVNSDLFSTHATDPDEPISIENDSVWELIPELEKKMHAHQKKAFEFLWQNISGSMEPSLMKEKSKTNGGCVISHAPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKAPIPVYLIHGRRTWKGSTTQKSMVLPGIPRPSSNVKHVIDCLSKIQKWNSHPSVLVMGYSSFLTLMRSEDTKFAHRKYMVKALKESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCLARPKFVHEVLQELDSKYRRRDKVAKKARHLLEARARKFFLDNIEKKVNSDFDEERMQGLYVLKKITSGFIDVYDSGNSSDTLPGLQIYTLLMNTSDEQHEIIQKLQKKMAECTGYPLEVELLITLASIHPWLIKTAAACAAKFFAEEEFEKLEELKFDLRKGSKVRFVLSLVSRVVKKEKVLIFCHNLAPVRFFIELFEKYFQWQNGKEILLLTGEQDLFERGKVIDKFEDPRGNSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLMSGSMEEDKHRRTSWKEWVSCMIFSEEFVEDPSKWQAEKIEDNILREMVEEDKSKAIHMILKKEKDSTSKSKITV* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0995 1227 Gene3D - 85 145 - -
Tpr7g0995 1227 CDD SF2_C_SNF 1023 1152 - -
Tpr7g0995 1227 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1220 IPR044567 GO:0080188
Tpr7g0995 1227 Coils Coil 477 500 - -
Tpr7g0995 1227 MobiDBLite consensus disorder prediction 337 357 - -
Tpr7g0995 1227 SMART ultradead3 634 872 IPR014001 -
Tpr7g0995 1227 Gene3D - 943 1226 IPR027417 -
Tpr7g0995 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1206 IPR027417 -
Tpr7g0995 1227 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1027 1193 IPR001650 -
Tpr7g0995 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 878 IPR027417 -
Tpr7g0995 1227 Pfam Helicase conserved C-terminal domain 1024 1140 IPR001650 -
Tpr7g0995 1227 SMART helicmild6 1056 1141 IPR001650 -
Tpr7g0995 1227 Pfam SNF2-related domain 640 913 IPR000330 GO:0005524|GO:0140658
Tpr7g0995 1227 Gene3D - 610 906 IPR038718 -
Tpr7g0995 1227 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1220 - -
Tpr7g0995 1227 MobiDBLite consensus disorder prediction 326 363 - -
Tpr7g0995 1227 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 663 864 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0995 Tpr-Chr7 9311217 9316060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0995 1067 1159 RAD5 or RAD16-like Gene Family AT5G05130 40.426 1.59e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr7g0995 SNF2_N 6.5e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0995 K10875 - gmx:100781856 1231.85