Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0988 ATGGATTCCGAGTTTCCTAACAAAGCATTAACCACCACTCGTTTTTCCGACCTCAAACCTCCACTTTCCGATCCCGTTCTTCAAGCTCTCACACATTCCGGCTTCGATTTCTGCACTCCCGTTCAAGCCGCCACCATTCCTTTACTCTGTAGCTTCAAAGACGTCGCCGTCGACGCCGCCACTGGTTCAGGAAAAACCCTAGCTTTCGTCATTCCACTAGTCGAAATTCTTCGCCGCAACTCTTCCAATCCCAAACCTCACCAGGTATTGGGAATAATTATATCTCCTACAAGGGAACTAGCATCCCAAATATATCATGTTGCACAACCTTTTATTTCAAGTTTAACTAATGTTACATCGATGCTACTCGTCGGCGGAGTAGAAGTAAAAACTGATATGAAGAAAATTGAAGAAGAAGGAGCTAACATATTGATCGCCACGCCTGGTCGATTACATGACATAATGAATAGGATGGATGTTATGGATTTCAAAAGCTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTGGATATGGGATTCCAGAAGCAAATAAATGCTATCATAACTCAGTTGCCTAAGCTTCGGAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAACCCTGTTAGGGTTGAAGTTCGAGCTGAAACAAAAAGATTGAATGATTCTGCTGCATCAAAGCAACTAGAATCTTCAAAGATACCTTCAGGTCTTCACATTGAGTACATGGAATGTGAGGCGGATAAGAAACCATCGCAGCTGGTAGATTTCCTTGTTAAGAACCGCTCGAAAAAAATTATAATATATTATATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTTCTTCCTCGTCTTTCTGTTTTGAAAGGCTTCTCCTTGATCCCCCTTCATGGAAAGATGAAGCAGTCTGTCAGGGAGAAGGCACTAACTTCTTTTACATCCCTTTCAAATGGAATTCTTCTGTGTACGGATGTTGCAGCACGTGGACTAGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTTTTCGTACATAGGTCTGGTCGAACTGCTCGGCTGGGTAAACAAGGGCATGCTGTGGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAGGAGTTCCTCTTCAAGAGAGAATGTGCTCCGACAATGCACCTGATGTTGTACCTGAGATTCGTTCTGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCTTTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGCAAATTAGCCACGGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGGTAAAACGCCACACACTATCCACTGAGGGATTTGAACCGGTTAAAGATATCAATTTCGAGGACATTAAGTTCAGGGATAAATCAAGGGAGAAACAACGGAAGAAAAACCTGCTGGTAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACCAAAGAAAACCCCAATTGTGCCTACTGCCATGAGGAAGAAAACAGCCAAACAGAGACGTGCTCAGCAGACAGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGAATGAATATGCCAAGTTGACAGGCACTGAGGATTTACTTTGA 1770 0.4266 MDSEFPNKALTTTRFSDLKPPLSDPVLQALTHSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRNSSNPKPHQVLGIIISPTRELASQIYHVAQPFISSLTNVTSMLLVGGVEVKTDMKKIEEEGANILIATPGRLHDIMNRMDVMDFKSFEILILDEADRLLDMGFQKQINAIITQLPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKRLNDSAASKQLESSKIPSGLHIEYMECEADKKPSQLVDFLVKNRSKKIIIYYMTCACVDYWGVVLPRLSVLKGFSLIPLHGKMKQSVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRSGRTARLGKQGHAVVFLLPKEESYVEFLRIRGVPLQERMCSDNAPDVVPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEVKRHTLSTEGFEPVKDINFEDIKFRDKSREKQRKKNLLVKKEAKEKEPKPKKPKKTPIVPTAMRKKTAKQRRAQQTVEDEEELTQEYRLLKKLKKGTIDENEYAKLTGTEDLL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0988 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Tpr7g0988 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Tpr7g0988 589 SMART ultradead3 34 234 IPR014001 -
Tpr7g0988 589 MobiDBLite consensus disorder prediction 507 558 - -
Tpr7g0988 589 Pfam Domain of unknown function (DUF4217) 416 472 IPR025313 -
Tpr7g0988 589 Gene3D - 253 480 IPR027417 -
Tpr7g0988 589 SMART helicmild6 290 375 IPR001650 -
Tpr7g0988 589 Gene3D - 3 227 IPR027417 -
Tpr7g0988 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Tpr7g0988 589 CDD SF2_C_DEAD 254 384 - -
Tpr7g0988 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Tpr7g0988 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Tpr7g0988 589 CDD DEADc_DDX55 26 224 - -
Tpr7g0988 589 MobiDBLite consensus disorder prediction 507 530 - -
Tpr7g0988 589 PANTHER RNA HELICASE 25 586 - -
Tpr7g0988 589 SMART DUF4217_3 413 476 IPR025313 -
Tpr7g0988 589 Coils Coil 539 559 - -
Tpr7g0988 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 586 - -
Tpr7g0988 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 419 IPR001650 -
Tpr7g0988 589 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0988 Tpr-Chr7 9231827 9239079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0988 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 27.882 1.08e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0988 K14809 - gmx:100801482 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0988 7 9231827 9239079 Tpr7g0988 7 9231827 9239079 ECH