Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0967 ATGAGTAAGCTTCAGAGCGAAGCAGTCAGAGAAGCCATCTCAGGAATCATGACCGATTCGAAGGATAAGAATCGTAAGTTTGTGGAGACTATTGAACTTCAAATTGGTTTGAAGAACTATGACCCACAAAAAGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCCCATATCCCTCGTCCTAAGATGAAGATTTGTATGCTTGGAGATGCCCAGCATGTTGAGGAGGCTGAGAAGATTGGATTGGAATCCATGGATGTAGAAGCCTTGAAGAAGCTCAACAAAAACAAGAAGTTGGTGAAGAAACTCGCCAAAAAATATCAGGCTTTCTTAGCTTCTGAGGCTGTCATTAAGCAGATTCCTCGGCTTTTGGGTCCTGGACTCAATAAGGCAGGAAAGTTCCCAACTCTTGTTTCTCACCAGGAATCTCTTGAAGGAAAGGTTAATGAGACCAAGGCTATGGTCAAGTTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTTGGTAATGTTAGCATGGACGAAAAACAAATCTTTCAAAATGTTCAACTCAGTGTTAATTTCCTTGTCTCCCTATTGAAAAAGAATTGGCAGAATGTTCGGTGTTTGTACCTAAAGAGTTCCATGGGGAAATCATACCGTGTCTTTTAG 651 0.4209 MSKLQSEAVREAISGIMTDSKDKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKYQAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSYRVF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0967 216 SUPERFAMILY Ribosomal protein L1 22 216 IPR023674 -
Tpr7g0967 216 CDD Ribosomal_L1 7 215 IPR028364 -
Tpr7g0967 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Tpr7g0967 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 214 - -
Tpr7g0967 216 Pfam Ribosomal protein L1p/L10e family 23 210 IPR028364 -
Tpr7g0967 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 214 - -
Tpr7g0967 216 Gene3D - 21 211 - -
Tpr7g0967 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Tpr7g0967 216 Gene3D - 65 154 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0967 Tpr-Chr7 8917062 8919410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0967 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 88.889 3.15e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0967 K02865 - gmx:100305550 386.726