Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0963 ATGAGTTCAGGCGAATTGGGCTGCATCTACGCCACTTTGATTCTCCACGATGATGGAATCCCAATCACCGCGGAGAAAATCAGCACTTTGTTGAAGGCTGCTAATGTCACCGTTGAATCCTACTGGCCAAGCTTATTCGCTAAGCTTGCTCAGAGCAAGAACGTTGATGATCTCGTTTTGAACTCTGGCGCTGCCGGTGGTGCCGCTGTTGTCTCATCCGCACCTGCTGCTGGTGGTGGTGCCGCAGCAGCAGCCGCACCTGCCGTTGAGGAGAAGAAGGAAGAAGCTAAGGAAGAAAGTGACGATGACATGGGCTTTAGTCTGTTTGATTAA 333 0.5135 MSSGELGCIYATLILHDDGIPITAEKISTLLKAANVTVESYWPSLFAKLAQSKNVDDLVLNSGAAGGAAVVSSAPAAGGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0963 110 MobiDBLite consensus disorder prediction 88 104 - -
Tpr7g0963 110 Pfam 60s Acidic ribosomal protein 22 109 - -
Tpr7g0963 110 Hamap 50S ribosomal protein L12 [rpl12]. 6 110 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tpr7g0963 110 Gene3D - 1 63 IPR038716 -
Tpr7g0963 110 CDD Ribosomal_P1 5 109 - -
Tpr7g0963 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 110 - -
Tpr7g0963 110 MobiDBLite consensus disorder prediction 83 110 - -
Tpr7g0963 110 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 1 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0963 Tpr-Chr7 8895141 8896668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0963 1 110 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 57.522 5.50e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0963 K02942 - rcu:8269526 130.954