Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0962 ATGGAAAACAAAATCCAAAACTCAGTTTTACTTGAGTTATCAGCAACAGATGATATTGAAGCATTCAAAAGGGAAGTGGAAGAAAAGGGTTGTGATGTAAATGAAGCAGGATTTTGGTATTGTAGAAAATTAGGATCTAAGAAGATGTGTTATGAAAAGAGAACACCCCTTATGGTTGCTTCTTTGTTTGGAAGCAAAAGGGTTGTCAAATATATCATTCAATCAAACATGGTTGATGTTAGCATGCCAATTGGTTGTGAAAATGTCACCGCGTTACATTGTGCTGTTTCCGGTGGCTCTGAATCCACTCTTGAGATTGTTAAGCTCTTGGTTGATGCTGGAGCAGATATTGATTGTCTTGATGAGATAATTAAACAGAAATTTTCAGTTCTTAATTCAAAAGAATCATTAGAAAGTGAGAAGAAAGAGTATCCTGTTGATATATCATTGCCTGATATAAATAGCGGTGCTTTCGGAACAGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGTGTGTCCATTCGTTCATCCAGGGGAGAATGCTAGAAGGAGAGATCCAAGGAAGTATCCTTATAGTTGTGTTCCGTGCCCCGAGTTTCGCAAAGGGACATGCCAGAAGAAAGATGCTTGTGAGTATTCACATGGTGTCTTTGAGTCTTTGCTTCATCCTTCACAATATAGAACAAGGCTTTGTAAAGATGAGCTTAAGTGTTCTAGGAAAGTGTGTTTCTTTGCACATAAACCTGAAGAGTTGCGCCCGTTGTATGCTTCTACCGGTTCAGCAATGCCTTCACAAGAATCCTTACCAGTTTCAAATGTTTCAACACCAGTCATGTCTCCCTTGGTAGCTGGTTCATCTCCTAAGAGTGGAAACTTGTGGCAGAATAAAACCAATCAATCTCCACCTTCATTGCAACTTCCACGTAGCCACCAGCTGAAACATACTTCGAGTGCTAAGGATTTGTATCAGGAAATGGCACTTCTTGGTATAGAAAGAGCTACTAGTCAACAACAGCAGCAGCAGTTGATTGAAGAAATTCTTTCAATGCAACCTTCAACTCCTACTCAATTTCAATCGATGAGTAGGCTTCAGTTGAACCAAAACAGGAACATTAATGTTCAAGCAAGTTATCCATTCAACAACATTGTTTCCTCTTCTGTGAGAAAATCATCACCACCTGGATTTGATTCACCAGCTGCTGTGGCTGCAGCAATGATGAATTCAAGATCTTCAGCCTTTGCAACACGAAGCCAAAGTTTTATGGATCGCGGTGCGGCAAGACACCATTTTGGTGCTTCCAAACCCAATGGCAGGATGAACTCTGAACAATGGGATGGTGTGAACAAGTTCCAAAAATCTGTTTCTTTTGGGTCTAGAAATAATGGGGTAGCTGCCTCACCCTTGGCGCAGCAGCCAGAATATGTTGAACCGGATATCTCGTGGGTTCATTCGCTTGTTAAAGACGTTTCTTCTGAGAGTTCTGAGATGTTTGGCACTGAGAAGCAACATTATGATCTCTATAAACAAACATTATCACCATGGGCAGCCGCAGAGCAGATTGTAGCATAA 1605 0.4069 MENKIQNSVLLELSATDDIEAFKREVEEKGCDVNEAGFWYCRKLGSKKMCYEKRTPLMVASLFGSKRVVKYIIQSNMVDVSMPIGCENVTALHCAVSGGSESTLEIVKLLVDAGADIDCLDEIIKQKFSVLNSKESLESEKKEYPVDISLPDINSGAFGTDEFRMYSFKVKTCSRGYSHDWTVCPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYSHGVFESLLHPSQYRTRLCKDELKCSRKVCFFAHKPEELRPLYASTGSAMPSQESLPVSNVSTPVMSPLVAGSSPKSGNLWQNKTNQSPPSLQLPRSHQLKHTSSAKDLYQEMALLGIERATSQQQQQQLIEEILSMQPSTPTQFQSMSRLQLNQNRNINVQASYPFNNIVSSSVRKSSPPGFDSPAAVAAAMMNSRSSAFATRSQSFMDRGAARHHFGASKPNGRMNSEQWDGVNKFQKSVSFGSRNNGVAASPLAQQPEYVEPDISWVHSLVKDVSSESSEMFGTEKQHYDLYKQTLSPWAAAEQIVA* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0962 534 Gene3D - 1 149 IPR036770 -
Tpr7g0962 534 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Tpr7g0962 534 SMART ANK_2a 87 119 IPR002110 GO:0005515
Tpr7g0962 534 SMART ANK_2a 52 82 IPR002110 GO:0005515
Tpr7g0962 534 Pfam Ankyrin repeats (3 copies) 29 119 IPR002110 GO:0005515
Tpr7g0962 534 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Tpr7g0962 534 SUPERFAMILY Ankyrin repeat 3 122 IPR036770 -
Tpr7g0962 534 ProSiteProfiles Zinc finger C3H1-type profile. 202 229 IPR000571 GO:0046872
Tpr7g0962 534 PANTHER UNKEMPT FAMILY MEMBER 360 527 IPR045234 -
Tpr7g0962 534 PANTHER UNKEMPT FAMILY MEMBER 5 362 IPR045234 -
Tpr7g0962 534 Gene3D - 203 265 - -
Tpr7g0962 534 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 360 527 - -
Tpr7g0962 534 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 5 362 - -
Tpr7g0962 534 SMART c3hfinal6 237 260 IPR000571 GO:0046872
Tpr7g0962 534 SMART c3hfinal6 202 228 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0962 Tpr-Chr7 8887489 8901395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0962 8 503 C2H2 Transcription Factor Family AT5G12850 35.276 3.92e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g0962 Ank_2 3.7e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0962 - - mtr:MTR_3g070880 787.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0962 7 8887489 8901395 Tpr4g2377 4 25242576 25245746 ECH
Tpr7g0962 7 8887489 8901395 Tpr7g0962 7 8887489 8901395 ECH