Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0953 ATGGATCAGATTAAGAAGAAATCAAAGCTTGGATCTACTACATTGGAGGTTGAAAAAAAGAATTTACCGCAAGGATCTGTTTCAATGGAGGTTAACAAAAAGAATTCACCTCAAGGTTCTGTTTCAATGGAGGTTAACAAAAAGAAGAAACTAACTGCTGAACCTATAGAACATCAAGAGATATCTCAAGAGACCCAAATGGATCGTGACACCAAGATATCTCAGGTGACTGAAATCAACGATGGCATAAAGGTTTTGGCAGAAAACCAAGAGTTTGTTCATAATGTACCTCAGAAATCTCAAGATACCCAAATGCTTCAAGACAATAAGGAAAAGAAGCCTATTGAGTATGATTATGATGCTGTTAAAGATGTTACCAAGAAGAAAGAAATATGGAGACTAGGGGTGATTTTGGATGACATGTGGATTGTGTCGAAAGGAGAATCTGAAGTGATAATGGAAATGTTGCTCAGGGATATAAAGGGATATACTATCCAAGCGACTGTGATGACTGATGATATTGAGAAGTGGAAAGAACAACTTGCACAAGGCCAGACGTATTCTATGCGTAATTTTAGGGTTGCAGATAATGATTCACAATATAAGATGACTCCTCACAAATTTCGATTAATATTTGTTGGTGCAACAAGAGTTACTGCAGTTGAAATTCCAGAAATACCAAAAACACATTTTTACTTCAAGGATTTTGAAGAGATCTCTAATGGGACTTTTCGCACTGATCTGTTAGTTGATGCTATAGGAGTTGTTAACTCTATTGGGAAGATTGTTACTGCAACTACAACAAGGAAAGCTAATGTCGCTTTTACCATCAAAGATCAGCGTGATAAGGAACTTGATTGTACTCTGTGGGATTTAGTATCTGACCAATTTATCAATGGTTACAACCAACGATCTAATAATGATCCATGTGTCATCATTATGAGACATGTTCGAGTCAGAGAAGCACAAGGATCATACCCCTTGCAATTAACAAATGTGTGGAATGGAACTAAGATTCTATTTGATACATCGATACCTGAAATAGAAAAATTTCGTGCCAGCTTGCCCAAGGAAACTGTTTATGCGTCGCAAAACAGGTCTTTTTCAACTTCTACACAATTATACACCCAAAGTTATGCTGGTACTCAATACAATACTGATGAAAACTTCATGAGAAATGCCCAAGTTCTTTCATTGGGAGCTATTAAAAAACTTAAAAAGGATGCAGTTTGTGTTACTGTAGTGAACACTTCACACATTAGGGTGTCAAATGGAGGTTGGTTTTTTTATGCTTGCAATGATGGTACAAATGACTGCTCCTTAAAATGTGAAGGATCTGAACTCCCCTTTGTATGCCGAAAGTCACACACCACAAATGATCCTAGAGTCAAGTACAAGTTGGATGTTGAAGTATACGATGGTGACGATACAGCCAAGTTTGTTTTTTGGGACAATACTCTTGATGAGATGGTTGGCCTAACTGCAAAGACTCTACTTGAACAAGAAAAGAAGAATGGTTACGGTGACCAGCAGGAATATCCTCGCCATTTTGATGCTATCATGGAACGGAAATTTGCAGTTAGAGTTAAGTGGCAAATTGGATGGGGTGGGATGGGATCTGTTGTCATGTGTAAGGATAGTCCAGATTTGATTGCCAAAATTGAGGAACAACTTCCTATTGCAGAGAGTACATTCAAAGACATTGAAACCATCAATATAATTGAGGAAGAACTTTGTGCAATATCTCAATCACCTACGATTCAGGCTTTTACAAAAGACGATATTGAAAAATTTGCTCACCTAGATGATGGAATTCTATCAACACCAAATGTTTCAGCTTCATCAGAGAATGATATCTCTCCTTCTTCTCAAAAGACTCCAGCCAAAAGGACTGCTGCAAAGGAACAACCAGTTGAATCTCTCAATCTTGATTGTCAGGCTTCATCAACAAGATCTGGCAAACTGATTAAAAAAGAGAAAATTTAA 1986 0.3741 MDQIKKKSKLGSTTLEVEKKNLPQGSVSMEVNKKNSPQGSVSMEVNKKKKLTAEPIEHQEISQETQMDRDTKISQVTEINDGIKVLAENQEFVHNVPQKSQDTQMLQDNKEKKPIEYDYDAVKDVTKKKEIWRLGVILDDMWIVSKGESEVIMEMLLRDIKGYTIQATVMTDDIEKWKEQLAQGQTYSMRNFRVADNDSQYKMTPHKFRLIFVGATRVTAVEIPEIPKTHFYFKDFEEISNGTFRTDLLVDAIGVVNSIGKIVTATTTRKANVAFTIKDQRDKELDCTLWDLVSDQFINGYNQRSNNDPCVIIMRHVRVREAQGSYPLQLTNVWNGTKILFDTSIPEIEKFRASLPKETVYASQNRSFSTSTQLYTQSYAGTQYNTDENFMRNAQVLSLGAIKKLKKDAVCVTVVNTSHIRVSNGGWFFYACNDGTNDCSLKCEGSELPFVCRKSHTTNDPRVKYKLDVEVYDGDDTAKFVFWDNTLDEMVGLTAKTLLEQEKKNGYGDQQEYPRHFDAIMERKFAVRVKWQIGWGGMGSVVMCKDSPDLIAKIEEQLPIAESTFKDIETINIIEEELCAISQSPTIQAFTKDDIEKFAHLDDGILSTPNVSASSENDISPSSQKTPAKRTAAKEQPVESLNLDCQASSTRSGKLIKKEKI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0953 661 Gene3D - 118 222 IPR012340 -
Tpr7g0953 661 MobiDBLite consensus disorder prediction 47 67 - -
Tpr7g0953 661 MobiDBLite consensus disorder prediction 15 45 - -
Tpr7g0953 661 MobiDBLite consensus disorder prediction 610 630 - -
Tpr7g0953 661 Gene3D - 225 364 IPR012340 -
Tpr7g0953 661 CDD RPA1_DBD_B_like 251 356 - -
Tpr7g0953 661 MobiDBLite consensus disorder prediction 1 70 - -
Tpr7g0953 661 PANTHER NUCLEIC ACID-BINDING, OB-FOLD PROTEIN-RELATED 136 499 - -
Tpr7g0953 661 Gene3D - 376 535 IPR012340 -
Tpr7g0953 661 SUPERFAMILY Nucleic acid-binding proteins 231 362 IPR012340 -
Tpr7g0953 661 SUPERFAMILY Nucleic acid-binding proteins 406 533 IPR012340 -
Tpr7g0953 661 Pfam Domain of unknown function DUF223 154 249 IPR003871 -
Tpr7g0953 661 MobiDBLite consensus disorder prediction 610 644 - -
Tpr7g0953 661 CDD RPA1_DBD_A_like 133 218 - -
Tpr7g0953 661 PANTHER REPLICATION FACTOR A 1, RFA1 136 499 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g0953 661 SUPERFAMILY Nucleic acid-binding proteins 117 221 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0953 Tpr-Chr7 8777584 8782480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0953 146 498 Core DNA Replication Machinery Family AT5G45400 20.708 1.86e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0953 - - lang:109343677 274.248