Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0924 ATGGCACAATCTTCTTCACACTATGCTTTAACAATATTTGCAATTATTGTACTAAGCATCTTAGCCATTGCTTTCATATTTATCAACTACTTGATTCTTGTAACTAAATGTTGCTTAAATTGGCACCCATTGAGATGGTTTTCCATTCTACCACCTCAACAAAATGAAGAACCTTTCATAGCATTCTCCCCGAGGATTTGGAACCGCGGCGTCGACGAATCAGTCATCCAAGAAATCCCAACATTTCAATTCACAAAAAGAGGTGATAATAATGATGATCATCAAACTGTAAAAGGTTGTGTTGTCTGTTTGAATTCTTTCCAAGAACAAGATATGTTAAAAGTACTTCCAAATTGTAGCCACCATTTTCACTTAGATTGCATTAACATTTGGCTTCAAACAAATGCTAATTGCCCTCTTTGTAGAACAAGCATTTCAGGCAACACGCAGTTTCCGACGAACCATATCATACCAGCACCAAGCTCTTCACCACAGGATTCTCAGTTACTCTCTAACATAGGTAGTGATGAAGATTATGTGGTCATTGAATTGTGGGGAGAAGGAGAGAATCGAGGAACAATGTCGCATATGCAGCAAGAAAGAAACGAGCCGACAGAAAGACTAGAACCATTGAGTAGAACTCATTCAACAACTAGGAAAATGGAAGAGGAGAAGATGGTGCAGTTGAAACCATGGAAATGCCATCATGGTTCCATAATGGGTGATGAATGTATTGATGTTAGAAAGAAAGATGAACAATTTTCTTCTATTCAGCCTATTAGAAGATCTTTCTCATTAGATTCTGCAAGTGATAGAAAAGTTTACTTGGATGTTCAAGATATCATCCAACAGAATAATAGGCATCAAAGTAAGGATTGTGGTAATGAAGATTGTAATAGTAGCAGAGGTAGAAGATCATTCTTTCCATTTCGGTATGGTAGGGTATAA 948 0.3724 MAQSSSHYALTIFAIIVLSILAIAFIFINYLILVTKCCLNWHPLRWFSILPPQQNEEPFIAFSPRIWNRGVDESVIQEIPTFQFTKRGDNNDDHQTVKGCVVCLNSFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTQFPTNHIIPAPSSSPQDSQLLSNIGSDEDYVVIELWGEGENRGTMSHMQQERNEPTERLEPLSRTHSTTRKMEEEKMVQLKPWKCHHGSIMGDECIDVRKKDEQFSSIQPIRRSFSLDSASDRKVYLDVQDIIQQNNRHQSKDCGNEDCNSSRGRRSFFPFRYGRV* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0924 315 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Tpr7g0924 315 PANTHER RING-H2 FINGER PROTEIN ATL16 3 314 IPR044600 GO:0016567|GO:0016740
Tpr7g0924 315 SUPERFAMILY RING/U-box 76 149 - -
Tpr7g0924 315 Pfam Ring finger domain 100 142 IPR001841 -
Tpr7g0924 315 CDD RING-H2_PA-TM-RING 100 142 - -
Tpr7g0924 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
Tpr7g0924 315 MobiDBLite consensus disorder prediction 194 225 - -
Tpr7g0924 315 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 314 - -
Tpr7g0924 315 MobiDBLite consensus disorder prediction 191 225 - -
Tpr7g0924 315 SMART ring_2 100 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0924 Tpr-Chr7 8409255 8410625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0924 4 288 C3H Transcription Factor Family AT1G04360 44.408 9.38e-74 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0924 K19041 - gmx:100809883 347.436