Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0877 ATGGCTCCTCCTCCTTCAGATATCAATCATCTTTCTCACCCTTGCATATATGGTGATTTTTCTTCTTCATACTCAGAGAGGAAGTCTGGTTTTATGAAATGGTTTGGCAAGATTTTCAAAATTGGGTCAAATAGAGGAAGGAGTGGCGGTCATCATCTACAACAACCTATAGACGAAAACATGTCTTGGCGAGCTCCACCGAGATCCTTGGATAACCGTGGTAGATCTAAGAAGGAGGAAGAGGATTTGAACAATGCAATTGCACTTTCTTTAAGTGAAGATTTAAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTGATGATGATTACGCAAAGGCACTTCAGGATCGCACAAACTCGTCTCTACACCCTCCATATGCTCCTTTACCGTTTTATCCCCGGGGATACAGTATGCCATCACAAGTCAGAATATGTGGAGGCTGCAACAAGGAGATACACTATGGTAATTGTTTGGGAGTTGAAAATAGTTATTTTCATCCAGACTGCTTTCGGTGTCACTCTTGTCATCAACCTATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCATAAGTATTGCTTTAAAGAATTGAGCCATCCTAAATGTGAAGTTTGTCATCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGTGTCATCCCTATTGGAATCAAAAGTATTGTCCATCTCACGAATATGATAATACAGCTCGCTGTTGTAGCTGTGAAAGATTAGAGTCTCGGGGCGAACGGTACTTTAGATTAGATGATGGACGGATTTTGTGCTTCGAGTGCATGGAATCTGCAATAACAGATACCGGTGAATGTCAACCTCTTTATCATGCTATTAGAGACTATTACGAAGGAATGAATATGAGAATCGATCAACAAATCCCTATGCTTCTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAAAAGAATGGTTTCCATCACTTGCCAGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGCGTACATAGATGGTCAAAAATTGGTGGCCATCGATTAATAGGGATGCGAAGTCAACCACAAAAGTTGATTCGAAAATGTGAAGTTACAGCTATTCTTGTTCTCTATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTTGCCCATGAGTTGATGCACGGTTGGTTACGCCTCAAAGGTTACCGCAACCTTGATCCTGCAGTAGAGGAAGGTATCTGTCAGGTTCTTTCTTACATGTGGCTTGAAGCAGAAGTCATGTCAGGTTCTAGAACCATGCCATCGACATCAACGGCTTCTTCCTCGTCCTCGTCCTCGTCCTCCTCCTATTCATCAAAGAAAGGTGTGAAATCCAAAGTTGAGAATAAGCTAGGCGAATTCTTCATGAACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGATCAGCTAATGCAGCTGTTAATAAATACGGTTTACGTTGTACTCTCGACCATATTCGTTTGACTGGTCAATTACCACTATAA 1542 0.4202 MAPPPSDINHLSHPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGRSGGHHLQQPIDENMSWRAPPRSLDNRGRSKKEEEDLNNAIALSLSEDLKIPAGYRWRTGADDDYAKALQDRTNSSLHPPYAPLPFYPRGYSMPSQVRICGGCNKEIHYGNCLGVENSYFHPDCFRCHSCHQPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSGLIEYRCHPYWNQKYCPSHEYDNTARCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSVHRWSKIGGHRLIGMRSQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLEAEVMSGSRTMPSTSTASSSSSSSSSSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQLPL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0877 513 ProSitePatterns LIM zinc-binding domain signature. 146 180 IPR001781 -
Tpr7g0877 513 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 513 - -
Tpr7g0877 513 Pfam Protein DA1 295 508 IPR022087 -
Tpr7g0877 513 CDD LIM 173 228 - -
Tpr7g0877 513 CDD LIM_DA1 146 198 - -
Tpr7g0877 513 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 237 - -
Tpr7g0877 513 Gene3D Cysteine Rich Protein 136 204 - -
Tpr7g0877 513 SMART lim_4 145 197 IPR001781 -
Tpr7g0877 513 Pfam LIM domain 146 199 IPR001781 -
Tpr7g0877 513 MobiDBLite consensus disorder prediction 46 79 - -
Tpr7g0877 513 PANTHER PROTEIN DA1-RELATED 2 21 513 IPR045218 -
Tpr7g0877 513 MobiDBLite consensus disorder prediction 434 454 - -
Tpr7g0877 513 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
Tpr7g0877 513 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 140 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0877 Tpr-Chr7 7739368 7749057 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr7g0877 DA1-like 1e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0877 - - gmx:100798829 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0877 7 7739368 7749057 Tpr7g0877 7 7739368 7749057 ECH
Tpr7g0877 7 7739368 7749057 Tpr4g3227 4 38278250 38283061 PCT