Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0834 ATGTACAGTACGATGAATTTCAAGATGGATCCTGACAAATCCAAGCTCTTCGTTGGTGGCATTTCTCGCGACACAACTGAAGATACTCTCAAACACCATTTCTCCAAATACGGCACCGTTTTGTTTTCCACCATTTCTTTTGACCGCACCACCCGAATCCCTAGAGGTTTTGGCTTCGTTACTTTCTCCGATATCTCTTCAGCTCACAATGCACTTCAAGACACCCACATTATTCTCGGTAGAAAGGTAGAAGTGAGAAAAGCAATACCCAGAAGTGAACAGCAACAACGATATCAACTACAGAATAGAGGGGGAAATTACTATAGTAACTATGAATGTAACAGTAATTACATTAGGACTAAAAAGATTTTTGTGGGAGGTTTACCTGCTAATATGTCTGTGGAGGAGTTTAAGAGATACTTTGAGAAGTTTGGTGCAATAACTGATGTGGTGGTGATGCAGGATAGTGTAACTCGTAGGCCGAGAGGGTTTGGGTTTATCACTTTTGATTCTGAAGATTCTGTGGAAAATGTTATGATGAGAAATTTTCATGACTTGAATGGTAGACAGGTGGAGGTTAAGAGAGCTGTTCCGAGGGAGGGGAGGTATGGTTATGATGATGGTTTTAGTAATAGGATAAGATATCAGAGTGATAGAGGAGCCGCTGAAACAACTTTGATTCCTTCTAGTCCTGCGAACACGCTTCCTGGATTTGCTCCTTTACCTTTGTATACTGGCGGTGGTGGAGTATATGGATACGGATCAAATCCCTATGGGTGCTGGTACCCTGTGGGTGGGTATGGTGGGAATGGATATGCTGCTCCATCAGATGCTTATAGGAACTTCTGGTATGGGCAAATGGTAACTGGTCCTCAGGCATGTCAGATGCCTTATGCTAATGTTATGCCCAATGTTGCATATATGGGCGGTAGGGTTGAAATTGTAGGTAGTGATGCTGCCGGAACATTGGGATACAATGCCTTTCTTGGGTCAACAACAAATTATAAATTTGACCAACCTTTTATTACTAATGGATTTGTTCCATGCAATGTACCATCGCCTCATAGTGTAAAGCTGAATGTTGGCGCTTCAAGTTTTAAAGGAAGCAATGGGGAAAATTCTAGTTGA 1128 0.4202 MYSTMNFKMDPDKSKLFVGGISRDTTEDTLKHHFSKYGTVLFSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHIILGRKVEVRKAIPRSEQQQRYQLQNRGGNYYSNYECNSNYIRTKKIFVGGLPANMSVEEFKRYFEKFGAITDVVVMQDSVTRRPRGFGFITFDSEDSVENVMMRNFHDLNGRQVEVKRAVPREGRYGYDDGFSNRIRYQSDRGAAETTLIPSSPANTLPGFAPLPLYTGGGGVYGYGSNPYGCWYPVGGYGGNGYAAPSDAYRNFWYGQMVTGPQACQMPYANVMPNVAYMGGRVEIVGSDAAGTLGYNAFLGSTTNYKFDQPFITNGFVPCNVPSPHSVKLNVGASSFKGSNGENSS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0834 375 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 9 364 - -
Tpr7g0834 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
Tpr7g0834 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Tpr7g0834 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 82 IPR000504 GO:0003723
Tpr7g0834 375 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 9 364 - -
Tpr7g0834 375 SUPERFAMILY RNA-binding domain, RBD 9 112 IPR035979 GO:0003676
Tpr7g0834 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 90 IPR000504 GO:0003723
Tpr7g0834 375 Gene3D - 119 204 IPR012677 -
Tpr7g0834 375 SUPERFAMILY RNA-binding domain, RBD 117 219 IPR035979 GO:0003676
Tpr7g0834 375 SMART rrm1_1 15 86 IPR000504 GO:0003723
Tpr7g0834 375 SMART rrm1_1 122 194 IPR000504 GO:0003723
Tpr7g0834 375 Gene3D - 3 118 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0834 Tpr-Chr7 7383525 7385227 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0834 14 268 Eukaryotic Initiation Factors Gene Family AT4G34110 24.809 4.22e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0834 K14411 - gmx:100816822 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0834 7 7383525 7385227 Tpr7g0834 7 7383525 7385227 ECH