Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr7g0834 | ATGTACAGTACGATGAATTTCAAGATGGATCCTGACAAATCCAAGCTCTTCGTTGGTGGCATTTCTCGCGACACAACTGAAGATACTCTCAAACACCATTTCTCCAAATACGGCACCGTTTTGTTTTCCACCATTTCTTTTGACCGCACCACCCGAATCCCTAGAGGTTTTGGCTTCGTTACTTTCTCCGATATCTCTTCAGCTCACAATGCACTTCAAGACACCCACATTATTCTCGGTAGAAAGGTAGAAGTGAGAAAAGCAATACCCAGAAGTGAACAGCAACAACGATATCAACTACAGAATAGAGGGGGAAATTACTATAGTAACTATGAATGTAACAGTAATTACATTAGGACTAAAAAGATTTTTGTGGGAGGTTTACCTGCTAATATGTCTGTGGAGGAGTTTAAGAGATACTTTGAGAAGTTTGGTGCAATAACTGATGTGGTGGTGATGCAGGATAGTGTAACTCGTAGGCCGAGAGGGTTTGGGTTTATCACTTTTGATTCTGAAGATTCTGTGGAAAATGTTATGATGAGAAATTTTCATGACTTGAATGGTAGACAGGTGGAGGTTAAGAGAGCTGTTCCGAGGGAGGGGAGGTATGGTTATGATGATGGTTTTAGTAATAGGATAAGATATCAGAGTGATAGAGGAGCCGCTGAAACAACTTTGATTCCTTCTAGTCCTGCGAACACGCTTCCTGGATTTGCTCCTTTACCTTTGTATACTGGCGGTGGTGGAGTATATGGATACGGATCAAATCCCTATGGGTGCTGGTACCCTGTGGGTGGGTATGGTGGGAATGGATATGCTGCTCCATCAGATGCTTATAGGAACTTCTGGTATGGGCAAATGGTAACTGGTCCTCAGGCATGTCAGATGCCTTATGCTAATGTTATGCCCAATGTTGCATATATGGGCGGTAGGGTTGAAATTGTAGGTAGTGATGCTGCCGGAACATTGGGATACAATGCCTTTCTTGGGTCAACAACAAATTATAAATTTGACCAACCTTTTATTACTAATGGATTTGTTCCATGCAATGTACCATCGCCTCATAGTGTAAAGCTGAATGTTGGCGCTTCAAGTTTTAAAGGAAGCAATGGGGAAAATTCTAGTTGA | 1128 | 0.4202 | MYSTMNFKMDPDKSKLFVGGISRDTTEDTLKHHFSKYGTVLFSTISFDRTTRIPRGFGFVTFSDISSAHNALQDTHIILGRKVEVRKAIPRSEQQQRYQLQNRGGNYYSNYECNSNYIRTKKIFVGGLPANMSVEEFKRYFEKFGAITDVVVMQDSVTRRPRGFGFITFDSEDSVENVMMRNFHDLNGRQVEVKRAVPREGRYGYDDGFSNRIRYQSDRGAAETTLIPSSPANTLPGFAPLPLYTGGGGVYGYGSNPYGCWYPVGGYGGNGYAAPSDAYRNFWYGQMVTGPQACQMPYANVMPNVAYMGGRVEIVGSDAAGTLGYNAFLGSTTNYKFDQPFITNGFVPCNVPSPHSVKLNVGASSFKGSNGENSS* | 376 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr7g0834 | 375 | PANTHER | NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED | 9 | 364 | - | - | |
Tpr7g0834 | 375 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 198 | IPR000504 | GO:0003723 | |
Tpr7g0834 | 375 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 191 | IPR000504 | GO:0003723 | |
Tpr7g0834 | 375 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 16 | 82 | IPR000504 | GO:0003723 | |
Tpr7g0834 | 375 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 9 | 364 | - | - | |
Tpr7g0834 | 375 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 112 | IPR035979 | GO:0003676 | |
Tpr7g0834 | 375 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 14 | 90 | IPR000504 | GO:0003723 | |
Tpr7g0834 | 375 | Gene3D | - | 119 | 204 | IPR012677 | - | |
Tpr7g0834 | 375 | SUPERFAMILY | RNA-binding domain, RBD | 117 | 219 | IPR035979 | GO:0003676 | |
Tpr7g0834 | 375 | SMART | rrm1_1 | 15 | 86 | IPR000504 | GO:0003723 | |
Tpr7g0834 | 375 | SMART | rrm1_1 | 122 | 194 | IPR000504 | GO:0003723 | |
Tpr7g0834 | 375 | Gene3D | - | 3 | 118 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr7g0834 | Tpr-Chr7 | 7383525 | 7385227 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr7g0834 | 14 | 268 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.809 | 4.22e-14 | 72.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr7g0834 | K14411 | - | gmx:100816822 | 490.73 |