Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0817 ATGATCAAAATCCCAAACCTTAAAATCCCCGAATGGGACACAACACAATGTTCCAACCGTTTCATTTCAAACGACACAAACACAAACATTTTTACTACCGAAGATTTTGATTTACCAATCCATGTTTTCTCCACAGACCAATTTCGAATGTTTGAATTCAAAGTGAGAAAATGCCAACGTGGCAGATCACATGACTGGACAGAATGTCCATACTCTCATCCCGGTGAGAAAGCTCGCCGGAGAGACCCACAAAAATACAATTACTCCGGCAATCCATGCCCGGAGTTTCGCAAATTAGGAAACTGCACCAAAGGTGATTCATGCTACTTTGCTCATGGTGTTTTTGAGTGTTGGCTTCACCCTTCTCGTTACAGAACTCAGCTTTGTAATGACGGTACCGCTTGTCGCCGGCGAGTTTGTTTCTTTGCTCATACTATTAATCAACTTCGTATCTCCACAAAAGCTTCACCAGAATCATTTGTTTCATCTCCTACTTCAGTTCTTGATTCTCCTCCGGGGAAATCTCGACATAGTGTTGTTCCGGTGAACGTGCAGGAATTAGTTGGGTTCATGCAGGAAACCCGGGTTGATGATCCGGGTCGGGTTTTACAGATGGGTTGTGTATTCGGGTCTCCGCGAGGTGGGTTTTTGAGTCTTCCATCAACCTCTGAAGGGGTTATTATGGAGAGGGTTGAATCAGGAAGAGATCTTAGAGCTAAAATCTATGCAAAATTCAGTAGAATGAATTCCAATTCCAACGATGGTGTTGTTTCGGTCCCTGTTCCTGATATTGGATGGGTTTCAGAACTTGTTAACTGA 819 0.4335 MIKIPNLKIPEWDTTQCSNRFISNDTNTNIFTTEDFDLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTECPYSHPGEKARRRDPQKYNYSGNPCPEFRKLGNCTKGDSCYFAHGVFECWLHPSRYRTQLCNDGTACRRRVCFFAHTINQLRISTKASPESFVSSPTSVLDSPPGKSRHSVVPVNVQELVGFMQETRVDDPGRVLQMGCVFGSPRGGFLSLPSTSEGVIMERVESGRDLRAKIYAKFSRMNSNSNDGVVSVPVPDIGWVSELVN* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0817 272 PANTHER UNKEMPT FAMILY MEMBER 25 272 IPR045234 -
Tpr7g0817 272 SUPERFAMILY CCCH zinc finger 86 117 IPR036855 GO:0046872
Tpr7g0817 272 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Tpr7g0817 272 Gene3D - 82 158 - -
Tpr7g0817 272 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 113 IPR000571 GO:0046872
Tpr7g0817 272 SMART c3hfinal6 123 146 IPR000571 GO:0046872
Tpr7g0817 272 SMART c3hfinal6 87 114 IPR000571 GO:0046872
Tpr7g0817 272 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 25 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0817 Tpr-Chr7 7209103 7210210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0817 37 150 C2H2 Transcription Factor Family AT5G12850 63.158 5.48e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr7g0817 zf-CCCH 9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0817 - K23048 mtr:MTR_3g103960 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0817 7 7209103 7210210 Tpr7g0817 7 7209103 7210210 ECH