Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0748 ATGGTGGTTGATGTCATGGATTCATCAAACGGCGACAATCATGACCAAGAACAACGTAAATGTCTCAAAAGGACCTTTGAACACTTGTACAGACAACCCATTGTCGAAGATTCTCCTTCTGAAGAATCCCTCATTGGCAATTTGGTTCCTAGAAGGGATCAGTTAGAGGCTTTTGAAGTTGCAAAGAAAAGGAACACAATTGCAATTATGGATACTGGTTCTGGTAAAACTTTGATAGCTATAATGCTTATCAAAGAAATTGGTCAATCAATTAGGTCAAGTGGAGTGAAAAAATTGATTATTTTCTTAGCTCCAACAGTTCATCTTGTGAATCAGCAATACAGGAATATAAAAGTTAATACAGATTTTCAAGTTGAGGAATACTATGGGTTGAAAGGAGTTGATACATGGAATTTGAGGTGCTGGCAGAAGGAAGTTAGCGACAATGATGTGATGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGAGTATTGAAATGATACGCTTGATGGTTCTTGATGAGTGTCACTGGGCATCAGGCAACCATCCCTATGCAAAAATAATGACGGAATTTTATCACCCAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCAGTTGGTAAAAGAGGTGTTTCTTCTACTTTGGTTTGTGAGGATCAGATATCAGACCTTGAAAACATCTTGGATTGTCAGAGTTATGTTGTTAAAGATCGAACAGAGATGGACGCATATATTCCATCTGCAAAAGAGAGTTGTAGATTTTATGACCAAGCAAAATTTCCCGCTTTGAGTTTGAAGCCAAAAATTGAAGAAGTGTGGTCGAAGTGTGACTTGTTGTTAGAATTTCAAAGTGACTATAAGGATATGGACGATAAATTTAAGACACTGCATCAGCGGATGTCCAATGAACTGGCCAAAATATTGCATTGCCTCGAAGATCTTGGACTGTTGTGTGCTTATGAGGCTGCTAAAATCTGCCATCAGAAATTCTCTAAAATTTATGGAGAGTGTGAAGTTTACAGAAAAGCCAATCTTCAGTGTGTAACTGTCATTGAAGAAGTGATCCAATTAATTGATGAATCCCTTCATCTTGCCAATGAAATGATTTCGGACGTTGAATTCGATTGTTCAAAGGCAGTAGAGATGGGATACATATCACCAAAATTACTTGAACTTATTAAACTCTTTGAAACATTTGGAGAACCTAGTCAGTTAATGTGCCTCATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATCGAAAGATTTGTGAAAAAGGTTTCCCAGTTATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAACTGATGCACTGGCTCGTAATAGGCAGAAAGAAGTATTGGATTCTTTCCGAACCGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCGTGTGTGATACGTTTCGACCTCCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGACGTGCTAACTCTCAATTTATTTTGATGGTGGAGAGAGGAAATTTGAAGCAAAGAAATCTGCTCTTTGACATAATCAGGAGTGAGCGTTCCATGAATGATGCAGCTGTTAGTAAAGACAATGGATGTAATTTAAGGACATTTACAGTTAGGAAAACAGAAGCATACCATGTGGATTCTACTGGAGCATCAGTCAATTTAGATTCTAGTGTTACTCTTATAAATCAATATTGCGAAAAGCTCCCACGTGATAAGTACTCCTCTGGAAAGCCCAATTTTGAGTCTGTGCCTGTGGAGGGAGGAGGGTACGAGTGTAAATTAACACTACCACCTAAGGCAGCTTTCCAAACAATAGTTGGTCCTTCAGGAAAAGATGTTCGGCTAGCAAAGACTCTTGTATGTCTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTGAATGATCATCTTGTTCCATCCATTGAAGATCCTCCAGAAGCAGACAATGTTGTAAAAAACAAGGAATCAAGTTCAGCTGCAGGTGCAGGAACCACAAAAAGAAAGGAATTACACGGCACAACCAGCATTCAGGCATTATGTGGTTCATGGGGTGACAAACTTGATGGAGCCAAATTTCATGCTTATAAATTTGAATTCAAGTGTAATATTGTTACTGAAATTTATTCTGGATTTGTTCTTCTGCTCGAGTCAAAGCTTGATGATGATGTGGGAAATTTGGAATTAGATCTTTATTTAATCTCAAAGTATGTGAAGACTTCTGTCATTTCATGCGGGCAAGTTTATTTGGATGCTGAACAGGTGGCGAAAGCAAAAAGCTTTCATGAACTGTTTTTCAATGGTTTGTTTGGGAGATTGATTCGTAAGTCGAAATCAGGAAATGGGGAAAGGGAGTTTTTACTGCAGAAAGACACAGAATTATTGTGGAGTCCAAAAAACTCGTATTTGCTTCTACCATTTGAGAAGTCAAATGATATGGAATCATTGCAAATACATTGGTCTGCAATCAGTTCTTGCGCTTCTGCTATTGAATTTATAAGGGGGAGATTTCCGTTGGTTGCAGAAGATTCTGATGATAACAGCAAAATCATATCACCGCCTTGTGATATCACCAATTCGTCGGATATGGAACATGAAAGCACAAACATTTTTCACTTTGCCAATTGTGCTATTGATGTTAATAATATGAAAGATACGGTAGCTTTGGCCATTCATACTGGGAAAGTATATTGTATCATTGATGTGGTTGAGAACTCATCCGCTGAAAGTGCTTTTGACGGAAACAGTGACAAGGCTGGAGCGGAATGCAAAGTGACGTTCTCGCAGTATTTCAAGAAAAGGTATGGAATCACATTAAAACATCCAGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCACACAATCTTTTTTTGAACATTCATGACGAAGATGCCGAGGACAAGTCGTCACTAATTGGCCCGGTAACCAAAAAACCGCCTGTGCATGTTCACATTCCACCTGAGCTTCTTTGTCTTCTTAATATTAAAAGAGATGTGTACAAGTCAATGTACTTACTACCATCTCTTATGTACCGTATCGAATCTCTCATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGGCCACACTGACATTTTCAAGATACCTAGCTCTCTGGTTCTAGAAGCACTTACAACTTTAAGATGCTGTGAAAAGTTTTCTATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAATACGCGGTGAGCTGTCATCTCTTTCTTAAATATCCTAAGAGACAAGAAGGACAGTTATCTGCCAAAAGACAATACGCTGTTCGTAATTCAACCCTACATAAATGTGGAACAGATCGCAATTTGCAGGGATATATTCGAGATTCCGCATTTGATCCGCGCCGTTGGGTTGCTCCTGGACAAGACTGTATACACCCTGTTCATTGTGATTGTGGGTTGGAAACCCTAGAAGTTCCGTTAGATACGTTCATTACTGAAGATCCGAAAAAAGTGGTTGGGAAGCTGTGTGATAGGGGACACCGCTGGATGTGCTCGAAGACTATTGCTGATTGTGTTGAAGCTCTGATAGGGGCATACTATGTGGGTGGTGGATTGATTGCTGCACTTCACATGATGAAATGGCTTGGGATTGATTCAGGACTTGAACCATCCATGGTTGATGAAGCCATTACTGCTGCATCTCTTCACACATATACGCCAAAATTAAATGAGATTGCAATCCTTGAGACAAAAATTGGATACAAATTTTCTGTCAAAGGACTCTTAGTGGAGGCAACCACACATTTGTCTGAGACAGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTTGGTGACTCGGTATTGGACCTTCTCATCACATGGCATCTATATCAGAATCACACGGAAATTGATCCGGGAGAGTTGACTGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGCTGCAGTTAGACGAAACCTTCACACGCACCTTCTGCATAGCTCAGGATTATTACAAAACCAGATATTGGAATATGCGAAGGTCATTTCGGAATCAGAAGATAACAGTGTATCAATCCCGGGGATTAAAGCTCCTAAGGCACTTGGAGATCTAGTAGAGAGTATTGCTGGGGCTGTACTAATTGATACCAAGCTTGACCTTGATGTAGTGTGGAAGGTTTTCCATCCTTTGTTATCTCCCATTGTTACTCCTGATAAACTTGAACTTCCTCCATTGCGTGAATTAAATCAATTATGCGACTCTCTCGGATACTTTGTAAAAGTAAAAGTAAGCCGTGATAAGAAGGGAACCATGGAGCATGTTGTGCTTAGTGTACAGTTGCCAGATGCTAAATTGGTTCGAAAAGGAATGGGACCAAATCAAAAATCTGCGAAAGGAGATGCTGCTTTTCATTTGTTGAAGGAACTTGAGAAAAGGGGAATTTCGTACAAGGGAAAAAGAGTAATGGATTTCAGTGTTCCCGCTTGTCAAACGGAAGAACAGCCCCCAAAGCAAGTAGCACATAAAAAGCCCAAATTGGAAAAAACTAACCCAACTGCTAATCCATCCGCTAGTGATCTCAATGACATTTCCACCGGATCTTCTGATATTAGTCATACCATTCCAGTTATTCCAGCAAGTAAAATGAAAACGAAGGGAGGACCCCGGACTGAACTGTATGCAGTTTGCAAGAGAATGCAGTGGCCATTGCCTTCATTTGATTCGAAAGAATATAAAGATAGATCTCTATTTAAATCGTGTGAAGGCCTGGAAGGAAGCAAAGGACTGAACTGTTTTGTGTCAAAAATAACTTTGTGCATACCACGTCATGGTGATTTAGAATGTGAAGGAGAAGCTAGAGCTGATAAGAAGAGCTCATTTGACGCTGCTGCAGTTAAAGTGCTTTATGAGCTACAACGCCTTGGAAAGATTACTATTGATGATGTTTCCCAATAA 5019 0.3981 MVVDVMDSSNGDNHDQEQRKCLKRTFEHLYRQPIVEDSPSEESLIGNLVPRRDQLEAFEVAKKRNTIAIMDTGSGKTLIAIMLIKEIGQSIRSSGVKKLIIFLAPTVHLVNQQYRNIKVNTDFQVEEYYGLKGVDTWNLRCWQKEVSDNDVMVMTPQILLDALRKAFLSIEMIRLMVLDECHWASGNHPYAKIMTEFYHPANEKPKIFGMTASPVGKRGVSSTLVCEDQISDLENILDCQSYVVKDRTEMDAYIPSAKESCRFYDQAKFPALSLKPKIEEVWSKCDLLLEFQSDYKDMDDKFKTLHQRMSNELAKILHCLEDLGLLCAYEAAKICHQKFSKIYGECEVYRKANLQCVTVIEEVIQLIDESLHLANEMISDVEFDCSKAVEMGYISPKLLELIKLFETFGEPSQLMCLIFVERIITAKVIERFVKKVSQLSHLTVAYVTGSNTSTDALARNRQKEVLDSFRTGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMVERGNLKQRNLLFDIIRSERSMNDAAVSKDNGCNLRTFTVRKTEAYHVDSTGASVNLDSSVTLINQYCEKLPRDKYSSGKPNFESVPVEGGGYECKLTLPPKAAFQTIVGPSGKDVRLAKTLVCLEACKKLHQMGALNDHLVPSIEDPPEADNVVKNKESSSAAGAGTTKRKELHGTTSIQALCGSWGDKLDGAKFHAYKFEFKCNIVTEIYSGFVLLLESKLDDDVGNLELDLYLISKYVKTSVISCGQVYLDAEQVAKAKSFHELFFNGLFGRLIRKSKSGNGEREFLLQKDTELLWSPKNSYLLLPFEKSNDMESLQIHWSAISSCASAIEFIRGRFPLVAEDSDDNSKIISPPCDITNSSDMEHESTNIFHFANCAIDVNNMKDTVALAIHTGKVYCIIDVVENSSAESAFDGNSDKAGAECKVTFSQYFKKRYGITLKHPEQPLLRLKQGHNAHNLFLNIHDEDAEDKSSLIGPVTKKPPVHVHIPPELLCLLNIKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINGHTDIFKIPSSLVLEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKYPKRQEGQLSAKRQYAVRNSTLHKCGTDRNLQGYIRDSAFDPRRWVAPGQDCIHPVHCDCGLETLEVPLDTFITEDPKKVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLIAALHMMKWLGIDSGLEPSMVDEAITAASLHTYTPKLNEIAILETKIGYKFSVKGLLVEATTHLSETEHGTGCCYERLEFLGDSVLDLLITWHLYQNHTEIDPGELTDLRSASVNNDNFAQAAVRRNLHTHLLHSSGLLQNQILEYAKVISESEDNSVSIPGIKAPKALGDLVESIAGAVLIDTKLDLDVVWKVFHPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKVSRDKKGTMEHVVLSVQLPDAKLVRKGMGPNQKSAKGDAAFHLLKELEKRGISYKGKRVMDFSVPACQTEEQPPKQVAHKKPKLEKTNPTANPSASDLNDISTGSSDISHTIPVIPASKMKTKGGPRTELYAVCKRMQWPLPSFDSKEYKDRSLFKSCEGLEGSKGLNCFVSKITLCIPRHGDLECEGEARADKKSSFDAAAVKVLYELQRLGKITIDDVSQ* 1673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0748 1672 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 232 IPR014001 -
Tpr7g0748 1672 Pfam Dicer dimerisation domain 584 669 - -
Tpr7g0748 1672 Gene3D - 387 538 IPR027417 -
Tpr7g0748 1672 CDD RIBOc 1276 1426 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 ProSitePatterns Ribonuclease III family signature. 1296 1304 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 584 675 IPR005034 GO:0016891
Tpr7g0748 1672 CDD SF2_C_dicer 393 525 - -
Tpr7g0748 1672 MobiDBLite consensus disorder prediction 679 696 - -
Tpr7g0748 1672 Pfam Helicase conserved C-terminal domain 413 518 IPR001650 -
Tpr7g0748 1672 SUPERFAMILY RNase III domain-like 1062 1233 IPR036389 GO:0004525|GO:0006396
Tpr7g0748 1672 SUPERFAMILY PAZ domain 907 1022 IPR036085 GO:0005515
Tpr7g0748 1672 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 44 1664 - -
Tpr7g0748 1672 SMART helicmild6 430 518 IPR001650 -
Tpr7g0748 1672 SMART PAZ_2_a_3 887 1047 IPR003100 GO:0005515
Tpr7g0748 1672 Gene3D paz domain 889 1024 - -
Tpr7g0748 1672 Pfam PAZ domain 893 1044 IPR003100 GO:0005515
Tpr7g0748 1672 ProSiteProfiles Ribonuclease III family domain profile. 1048 1219 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 SMART riboneu5 1067 1239 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 SMART riboneu5 1275 1428 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 556 IPR001650 -
Tpr7g0748 1672 ProSiteProfiles PAZ domain profile. 909 1023 IPR003100 GO:0005515
Tpr7g0748 1672 MobiDBLite consensus disorder prediction 677 696 - -
Tpr7g0748 1672 MobiDBLite consensus disorder prediction 1537 1552 - -
Tpr7g0748 1672 Gene3D - 46 283 IPR027417 -
Tpr7g0748 1672 Pfam DEAD/DEAH box helicase 53 212 IPR011545 GO:0003676|GO:0005524
Tpr7g0748 1672 Gene3D - 1582 1661 - -
Tpr7g0748 1672 Gene3D Dicer dimerisation domain 579 676 IPR038248 -
Tpr7g0748 1672 SUPERFAMILY RNase III domain-like 1260 1425 IPR036389 GO:0004525|GO:0006396
Tpr7g0748 1672 PANTHER DICER-RELATED 44 1664 - -
Tpr7g0748 1672 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1431 1499 IPR014720 -
Tpr7g0748 1672 Pfam Ribonuclease III domain 1296 1404 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 Pfam Ribonuclease III domain 1085 1218 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 CDD RIBOc 1067 1230 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 Gene3D Ribonuclease III domain 1054 1230 IPR036389 GO:0004525|GO:0006396
Tpr7g0748 1672 CDD DEXHc_dicer 50 246 - -
Tpr7g0748 1672 SMART ultradead3 46 243 IPR014001 -
Tpr7g0748 1672 MobiDBLite consensus disorder prediction 1518 1552 - -
Tpr7g0748 1672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 527 IPR027417 -
Tpr7g0748 1672 ProSiteProfiles Ribonuclease III family domain profile. 1260 1405 IPR000999 GO:0004525|GO:0006396
Tpr7g0748 1672 Gene3D Ribonuclease III domain 1256 1427 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0748 Tpr-Chr7 6657775 6668105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0748 397 516 Eukaryotic Initiation Factors Gene Family AT1G72730 34.167 9.00e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0748 K11592 - gmx:100806831 2271.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0748 7 6657775 6668105 Tpr7g0748 7 6657775 6668105 ECH
Tpr2g3502 2 38306560 38316129 Tpr7g0748 7 6657775 6668105 ECH