Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0723 ATGTCTTCTAAACTATGCGACTCTTGCAAATCCGCCACCGCTACTCTCTACTGCCGCCCTGACTCCGCCTTCCTCTGCAGCGACTGTGACTCCAAAGTCCACGCAGCTAACAAACTCGCTTCTCGTCATCCTCGCGTCACTCTCTGTGAAGTCTGTGAGCAAGCACCTGCACATGTCACCTGTAAAGCAGATGCAGCTTCTCTATGCATCACCTGCGACCGTGACATCCACTCTGCTAATCCTCTCGCCGCACGTCACGAGCGTCTTCCGGTTACTCCTTTCTTCGAATCTAAATCTTTTCACAATAATAATAACAACTACGATGCTGTTAAAGATGAAGCTGAAGCTGCTTCGTGGTTGATCTCTGATCCGAAAGCAGATCTCAACTCTTCTCCTTATATGTTCTCCGATTCCGAAGCTATTCCGTTTATGGATCTAGATTACGGTGCAATTGAACAAAAAAACGACGGTGTAGTTCCTGTTCACGGTAACTTCGATCCTTTCACTTCTGCTTATAAGAACAATACACATACAGAGTTAGAAACACCGTCACCGTCGCAGATTAGTAACAGTGTTTCATCGTCGATGGAGGTTGGAGTTGTTCCGGATGGAAACGCCGTATCGGAGATATCAAACTGCGGATACGGTAAAGCTGTGGCGGCTGATCGTGAAGCTAGAGTGTTGAGGTATAAGGAGAAGAGAAAGAATCGAAGGTTCGAGAAGACTATTCGTTACGCTTCTCGTAAAGCTTATGCAGAAACTAGGCCTAGGATTAAAGGGAGGTTTGCGAAACGCACCGATGCCGTTGATTCTATTTCTGGATACGGCGTCGTTCCGACGTGTTGA 846 0.4704 MSSKLCDSCKSATATLYCRPDSAFLCSDCDSKVHAANKLASRHPRVTLCEVCEQAPAHVTCKADAASLCITCDRDIHSANPLAARHERLPVTPFFESKSFHNNNNNYDAVKDEAEAASWLISDPKADLNSSPYMFSDSEAIPFMDLDYGAIEQKNDGVVPVHGNFDPFTSAYKNNTHTELETPSPSQISNSVSSSMEVGVVPDGNAVSEISNCGYGKAVAADREARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDAVDSISGYGVVPTC* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0723 281 Pfam CCT motif 223 265 IPR010402 GO:0005515
Tpr7g0723 281 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Tpr7g0723 281 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Tpr7g0723 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 1 278 IPR045281 GO:0009909
Tpr7g0723 281 SMART bboxneu5 1 48 IPR000315 GO:0008270
Tpr7g0723 281 SMART bboxneu5 49 91 IPR000315 GO:0008270
Tpr7g0723 281 CDD Bbox1_BBX-like 5 48 - -
Tpr7g0723 281 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 3 1 278 - -
Tpr7g0723 281 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Tpr7g0723 281 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Tpr7g0723 281 CDD Bbox1_BBX-like 48 91 - -
Tpr7g0723 281 ProSiteProfiles CCT domain profile. 223 265 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0723 Tpr-Chr7 6401341 6403336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0723 1 280 C2C2-CO-like Transcription Factor Family AT5G24930 49.862 3.97e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr7g0723 zf-B_box 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0723 - - mtr:MTR_3g105710 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0723 7 6401341 6403336 Tpr7g0723 7 6401341 6403336 ECH