Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0677 ATGGCTTATCACAACCAAGACCACCCACTCCATCATTTCACAGACCAACAACAACAACAACCAACCTCCGATCCTCACAACTCTTTCCAAACAGCACCTAATTGGCTCAACAACGCTCTTCTTCGAAACCTCGAAACCAACGTCAACGCTACAACAACAACCGCAACAAACAACAGTACCAATTTCCTCAACCTTGACACAACCGGCGCTGCTGCTGCTGGCTCCCAATCCTCCGGTCAATGGTTATCCCGTCCGATCCTACACCGTAATCAAAGCGAAGTCATCGATAACATCGCTGGAGATGGACTAAAGACAACGGAAAGCGGCGAAACAGCGGCGGAGGAAGGAGTTATGAACTGGCAGAAAGCGAAATACAAAGGTGAAATAATGGCTCATCCGCTTTACGAACAACTTCTATCAGCACACGTGGCGTGTTTGAGAATCGCCACGCCTGTTGACCAGTTGCCGAGAATCGACGCTCAGCTGGCAGAGTCACAGAGTGTTGTTGCCAAGTACTCTGCCTTTGGACAGGGCATGCTTGATGATGATAACAAACAACTCGACCATTTCATGTCGCACTATGTTTTGTTGCTTTGTTCGTTCAAAGAACAGCTTCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATTGAACAGTCTTTACAAAGTCTAACAGGAGTTTCACCCGGGGAAGGTACAGGAGCAACAATGTCCGAGGACGAAGATGAGCAAGTGGACAGCGATGTTAATCTGTTTGATGGTGGTATGGATGGTTCAGATAACAGCATGGGAGGATTTGGTCCTCTTGTTCTAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCATGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGCGATACAACTTCAGTCCTTAAAGATTGGTGGCAATCACATTCAAAGTGGCCTTACCCTACAGAGGAGGATAAGGCAAGGTTGGTGCAAGAAACAGGTTTGCAATTGAAACAGATAAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACTTCTAATGTCTTGAAGAGCAAGCGCAAGAGAAAAAGTAATGCAGGTGATTAA 1185 0.454 MAYHNQDHPLHHFTDQQQQQPTSDPHNSFQTAPNWLNNALLRNLETNVNATTTTATNNSTNFLNLDTTGAAAAGSQSSGQWLSRPILHRNQSEVIDNIAGDGLKTTESGETAAEEGVMNWQKAKYKGEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAESQSVVAKYSAFGQGMLDDDNKQLDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDVNLFDGGMDGSDNSMGGFGPLVLTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKDWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVLKSKRKRKSNAGD* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0677 394 MobiDBLite consensus disorder prediction 12 28 - -
Tpr7g0677 394 SMART KNOX1_2 123 167 IPR005540 GO:0003677|GO:0005634
Tpr7g0677 394 Pfam ELK domain 291 312 IPR005539 GO:0003677
Tpr7g0677 394 ProSiteProfiles 'Homeobox' domain profile. 311 374 IPR001356 GO:0003677
Tpr7g0677 394 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 21 390 - -
Tpr7g0677 394 SMART ELK_2 291 312 IPR005539 GO:0003677
Tpr7g0677 394 SMART KNOX2_2 176 232 IPR005541 GO:0003677|GO:0005634
Tpr7g0677 394 CDD homeodomain 314 375 IPR001356 GO:0003677
Tpr7g0677 394 MobiDBLite consensus disorder prediction 1 28 - -
Tpr7g0677 394 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 21 390 - -
Tpr7g0677 394 ProSiteProfiles ELK domain profile. 291 311 IPR005539 GO:0003677
Tpr7g0677 394 SUPERFAMILY Homeodomain-like 313 377 IPR009057 -
Tpr7g0677 394 Pfam Homeobox KN domain 331 370 IPR008422 GO:0003677|GO:0006355
Tpr7g0677 394 Pfam KNOX2 domain 183 231 IPR005541 GO:0003677|GO:0005634
Tpr7g0677 394 Pfam KNOX1 domain 125 166 IPR005540 GO:0003677|GO:0005634
Tpr7g0677 394 SMART HOX_1 313 378 IPR001356 GO:0003677
Tpr7g0677 394 Gene3D - 312 373 - -
Tpr7g0677 394 MobiDBLite consensus disorder prediction 374 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0677 Tpr-Chr7 5978201 5982407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0677 1 388 Homeobox Transcription Factor Family AT5G25220 65.412 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tpr7g0677 KNOX2 6.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0677 - - gmx:100810257 572.007