Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0573 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTTAAGAGGGATTTAAAGGCTTCTGCTCAAGCTTTTCAAGCTGAGGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCTCCTGGAGGTTTTCTGTTTGAATGGTGGTCTGTTTTCTGGGACATTTTCATTGCCAGGACTAATGAGAAGCACTCCGAGGTGGCTGCGTCGTATATAGAGACTCAATTAACTAAGGCAAGGGAACAACAACAACAACAGCAACAACAACAGCAGCAGCCTCAGTCTCAGCAGTCACAGCACGCACAGCAGCAACAACACTTGCAGATGCAACAACTTATGTTGCAGAGGCAGGCACAACAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCACCAGCAACAGCCACAATCGCAGCAGCAGTCACAACCACCACAACAGCAAAACAGGGATAGGGCTCATCTCTTAAATGGTAGTGCAAATGGGTTAGGTGGCAACCCGGGAACTGCTAATTCAATAGCAACAAAGATGTATGAGGAAAGGTTAAAAGTCCCCCCACAGAGGGATTCTTTGGATGATGCGGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCAGCTGCAGCCAGTGGTCAGCCTTCAGGGCAAGTCTTGCACGGCACTGCTGGTGGGATGTCTCCACATGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACCGGATATGAAGAGCGAGATAAATCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCGTTGTTAGGAATTTCTGGATCAAATCAAGGGAACAACAATTTGACTTTGAAAGGGTGGCCACTCACTGGTTTGGAGCAACTTCGCTCTGGTTTGCTTCAGCAGCAAAAGCCTTATATGCAGGCTCCTCAGCCATTTCATCAACTACAAATGTTGACACCACAGCATCAGCAACAGCTTCTGCTTGCACAACAGAGTTTGGCATCACCATCTGTTAGCGAAGAAAGTAGAAGGTTGAGAATGCTTTTGAGTAATAGGAATATTGGCCTAAATAAGGATGGCCTTTCAAATCCTGTGGGTGATGTGTTATCGAATGCTGGATCACCTATTCACGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAACAACAGCAGCAGCAACATCAACAACAGTCGAGCATCAATGCACAGCAGCAGCAGCAACTTCAACAGCACGCTCTTTCAAATCAGCAATCTCAGACTTCAAACCATAGCATGCACCAGCAAGATAAAGTAGGGGGAGGTGGTGGTAGTGTCACCATGGATGGTAGCATGTCAAACTCATATAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGAAGAAAGAGAAAGCAACCTGTATCTTCTTCGGGTCCTGCTAATAGTTCAGGAACAGCAAATACGGCAGGCCCATCACCTAGTTCAGCACCCTCAACTCCCTCAACTCATACTCCTGGAGATGCTATTTCAATGCCTGCATTGCCTCATAATAGTAAGTCTCTAATGATGTTTGGCACTGACGGTACCGGAACTCTTACGTCACCTTCAAATCAGTTGGCTGACGTGGATCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTATCGCAAGATGATACAGACCCTAGAGATCCTGTTGGCCATTGTATGGATGACTGCTTTTTTTCAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCAAGCTCAAGCAAAATTGCTTGTTGCCATTTCTCATCTGATGGAAAGTTACTTGCAAGCGGTGGCCATGACAAAAAGGCTGTTATATGGTACACGGATTCACTAAAACAAAAAGCTGTTCTTGAAGAGCACTCATCTTTGATAACTGATGTCCGTTTCAGTCCAAGCATGCCGCGTCTAGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCCCTCCGCACTTTTACGGGACATTCTACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGATCTTATCTGCTCCTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGCAGTTGTGTTAGAGTTTCTAAGGGTGGCACTACCCAGGTGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCTGAGAACATTGTGTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCACTAAAGGGTCATACAAAGACAATAAATTCTATATGTTGGGATCCATCTGGAGAGTTGATGGCATCGGCGAGTGAGGACTCCGTTAGGATTTGGACTCTTGGAATGGGAGGTGATGCAGAATGTGTTCACGAGCTTAGCTGTAATGGCAGTAACTTTCACTCGTGTGTTTTCCATCCGACATTTCCTTCACTGCTCTTCATTGGCTGTTATCAGTCATTGGAGCTATGGAACATGGCTGAAAACAAGACAATGACTTTGTCTGCTCATGATGGTTTAATTACTGCCTTGTCTGTTTCAACTGTAAATGGTTTGATTGCCTCTGCCAGTCATGACAAGTTCATCAAGCTATGGAAGTAA 2685 0.4495 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQQQQQQQPQSQQSQHAQQQQHLQMQQLMLQRQAQQQQQQQQQQQQQHQQQPQSQQQSQPPQQQNRDRAHLLNGSANGLGGNPGTANSIATKMYEERLKVPPQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAASGQPSGQVLHGTAGGMSPHVQARSQQLPGSTPDMKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPLTGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLLLAQQSLASPSVSEESRRLRMLLSNRNIGLNKDGLSNPVGDVLSNAGSPIHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSSINAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHNSKSLMMFGTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSQDDTDPRDPVGHCMDDCFFSGFTFSDVNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYTDSLKQKAVLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCVRVSKGGTTQVRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTINSICWDPSGELMASASEDSVRIWTLGMGGDAECVHELSCNGSNFHSCVFHPTFPSLLFIGCYQSLELWNMAENKTMTLSAHDGLITALSVSTVNGLIASASHDKFIKLWK* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 777 809 - -
Tpr7g0573 894 Coils Coil 116 142 - -
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Tpr7g0573 894 CDD WD40 610 894 - -
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515
Tpr7g0573 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515
Tpr7g0573 894 Pfam WD domain, G-beta repeat 612 641 IPR001680 GO:0005515
Tpr7g0573 894 Pfam WD domain, G-beta repeat 773 807 IPR001680 GO:0005515
Tpr7g0573 894 Pfam WD domain, G-beta repeat 650 684 IPR001680 GO:0005515
Tpr7g0573 894 Pfam WD domain, G-beta repeat 857 894 IPR001680 GO:0005515
Tpr7g0573 894 MobiDBLite consensus disorder prediction 410 455 - -
Tpr7g0573 894 MobiDBLite consensus disorder prediction 410 460 - -
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515
Tpr7g0573 894 MobiDBLite consensus disorder prediction 90 117 - -
Tpr7g0573 894 MobiDBLite consensus disorder prediction 130 157 - -
Tpr7g0573 894 SMART Lish 8 40 IPR006594 GO:0005515
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Tpr7g0573 894 Pfam LisH 10 36 IPR006594 GO:0005515
Tpr7g0573 894 MobiDBLite consensus disorder prediction 475 524 - -
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Tpr7g0573 894 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 894 - -
Tpr7g0573 894 Gene3D - 602 739 IPR015943 GO:0005515
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 809 IPR001680 GO:0005515
Tpr7g0573 894 Coils Coil 79 99 - -
Tpr7g0573 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Tpr7g0573 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Tpr7g0573 894 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 894 IPR044716 GO:0003714
Tpr7g0573 894 SMART WD40_4 855 894 IPR001680 GO:0005515
Tpr7g0573 894 SMART WD40_4 603 642 IPR001680 GO:0005515
Tpr7g0573 894 SMART WD40_4 770 808 IPR001680 GO:0005515
Tpr7g0573 894 SMART WD40_4 814 853 IPR001680 GO:0005515
Tpr7g0573 894 SMART WD40_4 688 728 IPR001680 GO:0005515
Tpr7g0573 894 SMART WD40_4 731 767 IPR001680 GO:0005515
Tpr7g0573 894 SMART WD40_4 645 684 IPR001680 GO:0005515
Tpr7g0573 894 SUPERFAMILY WD40 repeat-like 608 894 IPR036322 GO:0005515
Tpr7g0573 894 Gene3D - 740 894 IPR015943 GO:0005515
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515
Tpr7g0573 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 641 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0573 Tpr-Chr7 4808838 4816116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0573 689 893 Miscellaneous Gene Families AT5G08390 24.762 1.20e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tpr7g0573 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0573 - - pvu:PHAVU_009G096600g 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3363 1 37997510 38006005 Tpr7g0573 7 4808838 4816116 PCT