Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0570 ATGTCATTGTATAACACTCCAAAGTTCTTCAAGATTATCCAAAATCATGAACTGCAAAATGGTGAAATAAGAATACCAAAGAAATTTGTGGGAAAATATTGGAAAGGAATGCCGAATCCGGTAGTGATTACACTACCAAATGGTGTTGAACAAGAATTATTTTGGGTGAAGCATGATGGAGATATATGGTTACAAAAGAATTGGGAGAAAATAGCTAAGTTTCTCAAATTTGGTTATTTAGTTATTTTTAAATACATTGGAGGAGTATCTTTTAAGCTTAAGATATTCGGAATCGATTGTTTGGAAATCGACTATTCCAAAATTAAGTTCAGAGATGAACAAGTTGTGAGTGATGATGACAGTGTTGAAGTTACAAAATCACAAAAGAAGAGAAAAATGAAAGTTGAATTTGATATTGATACCTTAAGTGATGAATTATTTGTTGATCAAACTAACATTGCTGGTACCTCTCAAACAAGAAAAAGGGCTAGTAATAGAAGAATCATGAAAAAGAAGGCCACAAAATGCTCAACTAATGGAATAGGTATAGGTACTAGCAGAGGTGTGACTCCAAGTTTTAAACTGAAATTGACAAAAACTTATGCAACAGGCTATTTATTTAGAATTCCATGTGATTTTTCAAGAACATACCTGAAAGATTTTGAAGGAACTGTGATTATGAGAAAGATGGGTGAGGATAGGATTTGGAGGATGGATGTTAGATATGATCCTGAAGGTGATTTTTCCATTGTGAATAGTGGTTGGAAGCCATTTTGCGAGCAATATAACTTGCAAACCCGAGATGTTTGCAAGTTTGAGATGACTCGATCCAAACCACTTTCTTTTGCTGTCGCTATTAACCGAGCCAGAGGGTTATAA 879 0.3413 MSLYNTPKFFKIIQNHELQNGEIRIPKKFVGKYWKGMPNPVVITLPNGVEQELFWVKHDGDIWLQKNWEKIAKFLKFGYLVIFKYIGGVSFKLKIFGIDCLEIDYSKIKFRDEQVVSDDDSVEVTKSQKKRKMKVEFDIDTLSDELFVDQTNIAGTSQTRKRASNRRIMKKKATKCSTNGIGIGTSRGVTPSFKLKLTKTYATGYLFRIPCDFSRTYLKDFEGTVIMRKMGEDRIWRMDVRYDPEGDFSIVNSGWKPFCEQYNLQTRDVCKFEMTRSKPLSFAVAINRARGL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0570 292 PANTHER B3 DOMAIN-CONTAINING 4 289 - -
Tpr7g0570 292 CDD B3_DNA 7 96 IPR003340 GO:0003677
Tpr7g0570 292 CDD B3_DNA 191 288 IPR003340 GO:0003677
Tpr7g0570 292 SUPERFAMILY DNA-binding pseudobarrel domain 190 284 IPR015300 -
Tpr7g0570 292 Gene3D - 2 100 IPR015300 -
Tpr7g0570 292 ProSiteProfiles B3 DNA-binding domain profile. 192 290 IPR003340 GO:0003677
Tpr7g0570 292 Gene3D - 161 290 IPR015300 -
Tpr7g0570 292 Pfam B3 DNA binding domain 195 288 IPR003340 GO:0003677
Tpr7g0570 292 SUPERFAMILY DNA-binding pseudobarrel domain 6 99 IPR015300 -
Tpr7g0570 292 SMART B3_2 193 290 IPR003340 GO:0003677
Tpr7g0570 292 SMART B3_2 9 99 IPR003340 GO:0003677
Tpr7g0570 292 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0570 Tpr-Chr7 4789199 4790756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0570 7 292 B3 DNA Binding Superfamily AT3G18990 21.408 1.19e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr7g0570 B3 1.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0570 - - mtr:MTR_1g050845 258.455