Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0563 ATGGCAAATCCTACTCAGCATGTCATCATTGATATATCAACTTCAACTTCTGAAACGGCTCCTCGTGTTAATGGGGTAGAAGATTTTGGTGGGGGTGGAAGTGGTAGATTGCGTGTTTCTCGTCAAAATTCAAATGGGTCAAATTCCAGGTTGAATAGAGGAGATTCATCATCACGAGGAGGGCGCGGTAGGAGTCCGTTGAATTCAGGGTTTTGGATTTCTTTACAATTTATTTTCACATTAAGTCAAATTGTTGCTTCTTTTGTTGTTCTTTCTTCGTCAAGATATGAACATCCACAAGCACCATTGTTTGCTTGGATTGTTGGTTATGCTATTGGATGTATTGTTTCTCTCCCTTTGCTCGTATGGCGTTATTATTATACTAGAGAACAATATTTATCTCAAAATAATTCTACCATTGATGATCCTTCTGGTACACTTCTTTCAAATTCCACCACAATTCAAGGTGAAGATGATGTTCATGTTGTTGTTGCGGCTTCCTCCAGAACCAATCAAGTTTCATGGGTGATGAATCAGAGACTAAAGATACTCGTGGAATACATCAAAATCATTGTAGATTTATTTTTTGCAATATGGTTTGTTATCGGAAATGTATGGATTTTTGGAGGACCCTCGTCCGCCAATGAAGCGCCTAACTTGTACCGGTTATGTGTAGTGTTTCTTACTCTTAGTTGTATCGGTTACGCAATGCCCTTCATTCTATGTTTAACAATTTGCTGCTGTCTTCCTTGTATAATCTCCGCTCTTGGGGTCACAGAGGATGTAACACAAACCCGTGGTGCAACCTCTGAAACTATTAATGCTTTACCGACTTATAAATTCAAAACGACGAGAAGTAAAAATGAAGACGAAAGCAGTCCAACAACTATTGAAGGTGGAATTGTAGCCGAAGGAACGGAAAAGGAACGCATGATATCTGGAGAAGATGCTGTTTGTTGCATATGCATCCTGAATTATGAAAATGAAGATGAGTTGAGAGAATTGCCATGTTCACATCTTTTCCACAAAGAGTGTGTAGACAAGTGGTTGAAGATAAATGCATTATGCCCGCTTTGCAAGAGTGATGTTGCTGGGGATCCAACAAGAGTAGTCAGCGAGGAAAATTCCACCCAACAAAGGGGTGATAGCAGGGTTGAGAATAGTAATGTCAATACCTCCTCATTGTAA 1188 0.3965 MANPTQHVIIDISTSTSETAPRVNGVEDFGGGGSGRLRVSRQNSNGSNSRLNRGDSSSRGGRGRSPLNSGFWISLQFIFTLSQIVASFVVLSSSRYEHPQAPLFAWIVGYAIGCIVSLPLLVWRYYYTREQYLSQNNSTIDDPSGTLLSNSTTIQGEDDVHVVVAASSRTNQVSWVMNQRLKILVEYIKIIVDLFFAIWFVIGNVWIFGGPSSANEAPNLYRLCVVFLTLSCIGYAMPFILCLTICCCLPCIISALGVTEDVTQTRGATSETINALPTYKFKTTRSKNEDESSPTTIEGGIVAEGTEKERMISGEDAVCCICILNYENEDELRELPCSHLFHKECVDKWLKINALCPLCKSDVAGDPTRVVSEENSTQQRGDSRVENSNVNTSSL* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0563 395 MobiDBLite consensus disorder prediction 1 62 - -
Tpr7g0563 395 Pfam Ring finger domain 319 360 IPR001841 -
Tpr7g0563 395 MobiDBLite consensus disorder prediction 37 62 - -
Tpr7g0563 395 SUPERFAMILY RING/U-box 311 364 - -
Tpr7g0563 395 CDD RING-H2_RNF111_like 318 362 - -
Tpr7g0563 395 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Tpr7g0563 395 MobiDBLite consensus disorder prediction 1 22 - -
Tpr7g0563 395 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 42 380 - -
Tpr7g0563 395 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 42 380 - -
Tpr7g0563 395 MobiDBLite consensus disorder prediction 370 395 - -
Tpr7g0563 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 366 IPR013083 -
Tpr7g0563 395 SMART ring_2 319 359 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0563 Tpr-Chr7 4729173 4732233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0563 53 364 C3H Transcription Factor Family AT1G80400 53.943 2.68e-122 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0563 - - gmx:100775815 470.314