Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0548 ATGCAGTTCAAATCAACACAATCCTCATTTCGAGATCGTACACATGATTTCCACACCGTTGCAGAGAGATTGAAGAAATCACTATCATCATCATCATCAGGATCAGGTCCAAATGGACCTAGCAGTAGTTCTCCTTATCCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCCAGATCGGAGGATCCACGATCTGCCGTTGCAATTCAATCAGAATTTAATCGGAGAGCTTCCAAGATTGGTTTCGGAATTCATCAAACCTCTCAGAAACTTTCCAAGCTAGCCAAATTGGCGAAAAGGACTTCGGTTTTTGATGATCCAACTATGGAAATTCAAGAATTAACAAGTGTTATTAAGCAAGATATTACTGCACTTAACTCTGCGGTTGTGGATCTTCAATTAGTCAGCAATTCAAGAAATGAGAGTGGAAATGTTTCTACCGACACAACTAGCCATTCAACTACCGTTGTCGATGATCTAAAGACTCGATTGATGAGTACTACCAAAGAGTTTAAAGATGTTCTCACAATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGACAATTGTTTTCGGCAAATGCTTCTAAGGATTCTGCAAATCCTTTCATCCGTCAACGTCCGTTAGCTACAAAATCGGCTGCTAGTTCTTCTAATGCCCCTGCACCTCCATGGGCTAGTGGGAAGCAGGTGGATGGAGAGAGTCAACCATTGCTGCAACAGCAACAGCAGCAGCAGCAGATAGTTCCAGTGCAGCAGGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTCAATCAACTAGCAACACTTGTCTCCCAGCAAGGGGAGGTTGCCATCAGGATTGATGAGAACATGGATGATACATTGGCAAATGTAGAGGGGGCACAAGGGGCATTGTTGAAGTATTTGAATAGCATATCGTCTAATAGGTGGCTAATGATCAAGATTTTCTTTGTATTGATGTTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1041 0.4159 MQFKSTQSSFRDRTHDFHTVAERLKKSLSSSSSGSGPNGPSSSSPYPSSSSPSSSSSRSEDPRSAVAIQSEFNRRASKIGFGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNVSTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSANASKDSANPFIRQRPLATKSAASSSNAPAPPWASGKQVDGESQPLLQQQQQQQQIVPVQQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLMFFLMVFLFFVA* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0548 346 MobiDBLite consensus disorder prediction 210 224 - -
Tpr7g0548 346 PANTHER SYNTAXIN-32-LIKE 2 345 - -
Tpr7g0548 346 MobiDBLite consensus disorder prediction 9 23 - -
Tpr7g0548 346 CDD SNARE_syntaxin5 257 330 - -
Tpr7g0548 346 ProSitePatterns Syntaxin / epimorphin family signature. 260 299 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tpr7g0548 346 Gene3D - 67 309 - -
Tpr7g0548 346 MobiDBLite consensus disorder prediction 1 65 - -
Tpr7g0548 346 MobiDBLite consensus disorder prediction 209 244 - -
Tpr7g0548 346 MobiDBLite consensus disorder prediction 24 65 - -
Tpr7g0548 346 Pfam SNARE domain 291 342 IPR000727 -
Tpr7g0548 346 SMART tSNARE_6 249 316 IPR000727 -
Tpr7g0548 346 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 254 316 IPR000727 -
Tpr7g0548 346 SUPERFAMILY t-snare proteins 70 309 IPR010989 GO:0016020|GO:0016192
Tpr7g0548 346 PANTHER SYNTAXIN 2 345 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0548 Tpr-Chr7 4624234 4627928 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0548 1 346 SNARE and Associated Proteins AT3G24350 60.158 1.28e-140 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0548 K08490 - gmx:100777961 463.381