Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0543 ATGCAGGCCAAATCCACACATTCATCTTTTCGCGATCGCACACATGAATTCCACACAATCACCCAAACCTTCAAGAAATCATTACCAGAAGAAGAATCAAATGAACCTACTACCATTACTTCTTCCAGATCCGAACAACAACCAAATTCCGTTGCAATTCAATCAGAGTTCAATCGAAGAGCTTCCAAAATTGGTTATGGAATTCACCAAACCTCTCAAAAGCTTTCCAAACTCGCCAAATTGGCGAAAAGGACTTCGGTTTTTGATGATCCAACTGTCGAAATTCAAGAGCTAACAAGTATTATTAAACAAGATATTACTGCACTTAATTCCGCAGTTGTGGATCTTCAATTACTTACCAACTCTAGAAATGATTCTACCGACACAACTACTCATTCCACTACCGTTGTCGATGATCTTAAGACTCGATTGATGACCACTACCAAAGAATTTAAAGATGTTCTCACCATGAGAACTGAGAATTTGAAAGAACATGAGAGTAGAAGACAATTGTTTACGTCCTCTACCTCTAAGGATTTGGCAAATCCATTCCTACGTCAACGTCCATTAGCTACAAGGTCGGCTGCTACTGGTACCACTTCTAATGCCCCCGCACCTCCATGGGCGAGTGAGTCATCGTCTTCATCACAGTTGCTTCATAAAAAGCAAGAGGATGGGGAAAGTCAACCATTGTTACAACAGCAGCAGCAGCAGCAACAGATAGTTCCATTACAAGACAGTTACATGCAAAGCAGAGGAGAAGCTCTTCAGAATGTTGAGTCCACTATTCACGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCTCATCAAGGAGAGATCGCCGTCAGGATTGATGAGAACATGGATGATACAGTAGCTAATGTAGAGGGGGCACAAGCCTCCTTGTTGAAGTATCTCAATAGCATATCTTCTAATAGGTGGTTGATGATCAAGATTTTCTTTATATTGATACTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG 1017 0.4031 MQAKSTHSSFRDRTHEFHTITQTFKKSLPEEESNEPTTITSSRSEQQPNSVAIQSEFNRRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTVEIQELTSIIKQDITALNSAVVDLQLLTNSRNDSTDTTTHSTTVVDDLKTRLMTTTKEFKDVLTMRTENLKEHESRRQLFTSSTSKDLANPFLRQRPLATRSAATGTTSNAPAPPWASESSSSSQLLHKKQEDGESQPLLQQQQQQQQIVPLQDSYMQSRGEALQNVESTIHELSNIFNQLATLVSHQGEIAVRIDENMDDTVANVEGAQASLLKYLNSISSNRWLMIKIFFILILFLMVFLFFVA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0543 338 MobiDBLite consensus disorder prediction 21 50 - -
Tpr7g0543 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 26 IPR021538 -
Tpr7g0543 338 SMART tSNARE_6 241 308 IPR000727 -
Tpr7g0543 338 Gene3D - 49 301 - -
Tpr7g0543 338 MobiDBLite consensus disorder prediction 162 236 - -
Tpr7g0543 338 MobiDBLite consensus disorder prediction 192 217 - -
Tpr7g0543 338 Pfam SNARE domain 286 334 IPR000727 -
Tpr7g0543 338 MobiDBLite consensus disorder prediction 1 50 - -
Tpr7g0543 338 SUPERFAMILY t-snare proteins 55 301 IPR010989 GO:0016020|GO:0016192
Tpr7g0543 338 CDD SNARE_syntaxin5 249 333 - -
Tpr7g0543 338 PANTHER SYNTAXIN 2 337 IPR045242 -
Tpr7g0543 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Tpr7g0543 338 PANTHER SYNTAXIN-32-LIKE 2 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0543 Tpr-Chr7 4607528 4612439 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0543 1 338 SNARE and Associated Proteins AT3G24350 60.822 1.72e-136 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0543 K08490 - gmx:100811494 414.846