Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0541 ATGGATAATTCGGAAGATGATAGAGATCTTAATGATTTGTGTGATCAGAATGAAAGTGTAGAAATGAATTTGGGTGCTGAGGACGACGACGACGGTAAATATAATAAGATTTCTAACTTAACAGCTGATGAGATACTAGGTCTAGATTTTGATAGTGATCAGGAAGCTTATGATTTTTATTGTGAATATGCAAGATGGCATGGTTTTATAGTAAGGAAAGATGACGTGACTCGTGATGATAATGAGAAAGTAATAATGCGTCAGTTTGTATGCAATAGAGAAGGGTTTAGTAACAAAAAACAATCAACAAGACCTAACGCCAGAACTAATTGTCAAGCTAGGCTTCGTGTACGCTACAGTTTGAAAGCATCAAGATGGAAAGTCAAATGTTTTGAAGAGGTTCATAATCATGAACTAGCTCCTTCAAGATATACACACTTGGTTGCTTGCCGTGGAATGAAGGAGGCAGATAAAGCTCAGCCTGATAGTTCCAATGATGATGTTAGAACTGGTTATATAATGGGGTACACGGTGGCTCAAAAGGGTGCATCTGTTGGTTTTCGTTTTTCAAAGAAAAATCTATACAACGGTTTTAATAGCAAAATCCGTGGTGAAATTAAAGATGGAGATGTTGTTGCTGCCTTAAGTTATCTTAGCGGGAAGGCGAGCAATGATCCTATGTTATATGCAAAATTTACAACTACCGGTGATGGTAGATTGAAGCTGCTTTTTTGGGCAGATGGATGTAGCATATCGGATTTTCTATGTTTCCACGATGTTCTTGCAATTGACATGACACACGAGAAGAACAGTTACAATTGTCCTTTGGTAATTTTCTCCGGGTGCAATCATCATTCTCAAACAATTATATTTGGTTGTGCTTTGGTGTCAGATGAAACAATTGAGACATATAAGTGGGTCTTAAAATCTTTCTTAGAAGCAATGCGAAACAAACATCCCAAAGTTGTTGTGACAAATGGGGATGAAGTTATGATGGAGGCTATAAAGCATGCTTTTCCAGATTCATGTCATCAACTATGTGTTTGGAACTTGCACAAGAATGCATGTAAAAATGTCGAGAGTTCTTCATTTCCAGAGGATTTCAAAAAGGCAATTTACTCAAATTTCACTCCAAAAGAATTTGAAGATTTTTGGATAAAGATGGTTGCAGGGCACAAAATTGTGGGGAATGAGTGGGTTTCTAAAACCTTTGAGAATAGGTCATTGTGGGCCACTGCATACCTCCGTGATAAGCTTTTTGGTCGTGTACAGACTACGTGTCATTGTGAAACTATTGACTCAATCATCAAGAAATATATAAGGAAGAAAAGTAGTGTTTTCGAGTTTATGCATGATTTTGAGGAGACTTTGAGAAAACATAGAAATGATGAACTGATGGCTGATAATAAGTCTTTATTTTCAGAACCTGTGTTGACCACGCCTCTTCCAGAGTTTGAGAAAGATGCTGCAAAAATTTACACAGCAGAGCTTTTTAAAGAAGTTAAAGAGCAGATTTTATTAGCTGGTGCGTTAAATGTTATTGAGCGAATGGTAAATGAGAAGAAGGTTATCTTCAAGATAACCAAGTATTGTCATCCCAGTATTGAAACAAAAGTTGTTTATGATACTTCAAAGTCAGCATTTTATTGTGTGTGTAGACATTTTGAGTCTCGTGGCATTCCGTGTTCGCATATTTTTCGTGCCATGATCTTTGAGCATGTGGACCATATTCCAAGCAGTTTGATTTTGACACGGTGGACTAAGAATGCTAAGATTGCCTTACTGTCGTCGAATTCGATGGATGGAATAGATTATGATGTGATGGAATTTGCTCAGTTTGCGGCAGATGCTGCTTTTACTAGGTTGTGGCAGGTAGCCTTAAAAAATAAGGAACACTACAATGAGATCATGGATGACATATTGAAGCTTACTAACAAGTATAAGAAGATGAACGCTCTTGTTGACACACAAAGCTCGTCATCAGAACACATTGGTGATCCCAGCATAGATGAGACCAAAGGTACTCCCAAGAATAAAAAGATTGGCACGAAGAGGGCAAGTCATAGTTCAAATTGTAATAGCACAAAAGACAATGTTAAAACATGTTCAATGCATGTTTGTTTAAATGATAAGATTATGAATGACGATCAGTTTTCTCATCCAGAGTCTTCTAAATTTAGCACGGCAACTGATAGTGATAAAGAAATATTGGTATCTGATGTAAACTTGCAGGATAAAGAAATATTGGCATCTGATGTAAATGATGGTCGTGACACTCAAGATAAATTTAGTGAATGCTGTAATCAGAAGCAAAAGAAAGCGAAAGAGTTGACACAAAAATCAAAGAATGATGGTACAATCTTACAGGCTGGTTATTCTAGTGGAGGTCACCATGTTAATTCCAAAATGCAGTTTATATTACCTAAAATGCAATCCTCACCATATGGTTATGTCCCTCCGAGCCATGGATGGTGGAACTTGCCCTACTATAGTGGAGTTCCTATTTTACCGCAAGTACCCCAGTATTATAATGGAGTGCCGTTTAGTAATAGTGACACGCCACAAATGGGATTGCTACCAGAAGCCACGAAAAATTCTGGTCAAACAAGTGGAAATGGTGTTCAACCTTAG 2631 0.3748 MDNSEDDRDLNDLCDQNESVEMNLGAEDDDDGKYNKISNLTADEILGLDFDSDQEAYDFYCEYARWHGFIVRKDDVTRDDNEKVIMRQFVCNREGFSNKKQSTRPNARTNCQARLRVRYSLKASRWKVKCFEEVHNHELAPSRYTHLVACRGMKEADKAQPDSSNDDVRTGYIMGYTVAQKGASVGFRFSKKNLYNGFNSKIRGEIKDGDVVAALSYLSGKASNDPMLYAKFTTTGDGRLKLLFWADGCSISDFLCFHDVLAIDMTHEKNSYNCPLVIFSGCNHHSQTIIFGCALVSDETIETYKWVLKSFLEAMRNKHPKVVVTNGDEVMMEAIKHAFPDSCHQLCVWNLHKNACKNVESSSFPEDFKKAIYSNFTPKEFEDFWIKMVAGHKIVGNEWVSKTFENRSLWATAYLRDKLFGRVQTTCHCETIDSIIKKYIRKKSSVFEFMHDFEETLRKHRNDELMADNKSLFSEPVLTTPLPEFEKDAAKIYTAELFKEVKEQILLAGALNVIERMVNEKKVIFKITKYCHPSIETKVVYDTSKSAFYCVCRHFESRGIPCSHIFRAMIFEHVDHIPSSLILTRWTKNAKIALLSSNSMDGIDYDVMEFAQFAADAAFTRLWQVALKNKEHYNEIMDDILKLTNKYKKMNALVDTQSSSSEHIGDPSIDETKGTPKNKKIGTKRASHSSNCNSTKDNVKTCSMHVCLNDKIMNDDQFSHPESSKFSTATDSDKEILVSDVNLQDKEILASDVNDGRDTQDKFSECCNQKQKKAKELTQKSKNDGTILQAGYSSGGHHVNSKMQFILPKMQSSPYGYVPPSHGWWNLPYYSGVPILPQVPQYYNGVPFSNSDTPQMGLLPEATKNSGQTSGNGVQP* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0541 876 SMART 26again6 548 575 IPR006564 GO:0008270
Tpr7g0541 876 MobiDBLite consensus disorder prediction 656 692 - -
Tpr7g0541 876 MobiDBLite consensus disorder prediction 853 876 - -
Tpr7g0541 876 Pfam MULE transposase domain 260 354 IPR018289 -
Tpr7g0541 876 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 38 719 - -
Tpr7g0541 876 Pfam FAR1 DNA-binding domain 58 140 IPR004330 -
Tpr7g0541 876 ProSiteProfiles Zinc finger SWIM-type profile. 535 573 IPR007527 GO:0008270
Tpr7g0541 876 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 719 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0541 Tpr-Chr7 4596591 4603575 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr7g0541 MULE 2.8e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0541 - - ccaj:109792835 970.304