Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0510 ATGGATGAATATTCTGGTAAAAGAGCCGTTGACGGGGTGTTAGTCCCTAGAAAGGGGATGGGCAGTATGTTAAAAGATACTGCCAATACTCGAGATCGAAATGGTCAAGTATGTAGCCGCCTTGGTTGCAGCAGCAAAGTTAACTCTTCTAAAGGTTCTCAAATTGGTTCCTCTGAAAAGGGTAAATCGTTGAGGCCTTCATTTCGGTTCTCATCAAATGGTAAGGAAACAATTGGCAGCTCCTCTAAAAATTTCTCCGGGAGTAGTAACACTGGAAAACCTCATAGAAAGCCTCAGAAAACATTATCATCTCATGTAGAGACAGATTCATCTGAAACTAGTAGCGTACTAGATGAACCTGAAGTTTCAAAGCTCGTAGCTCCACCTGAAAAAAATCAGAAGGGACGTCAAGCTGAAGGGGAAAACACGGAGTCTGGTAATGGCATGCAGACGGAAGTAGGGAGTTCTAGTTTAGCATCTAATACAAGATCAAGGAGGAATTTTCATCCCAAACCTGGATTACATAGTCAAGAAATTCAAAGCACTGGTCCAGGGACACGTGCTGGTACTAGTAGGTATGGATTAAGGAACCTCAAATGCAACTCCATTTCTGATGTCATCCCGGCCGGCTGTACAGCATCAGATTCAACCCTTAACAAAAGGAAGGATGCGATAAAAAAGAGAAATTGTGAAGGCGAAAGTAGTTCTACAGCCAAAGGGAAAAAAATTAACGGGCCCTCGGTAGAAGGACGGAATTCCGTTTCCAGAAATGGCATATCTATCTCTGATTCAAGAGTATCAAGAAATACCTCTAATAGGGACAGACCAGAGAGCAATATAACGTCTGTTAGAACACGAAGATCAATTGGTGGTCATGCTAGGGGAAGGCTTTCTGGCCAAGGAAGTGCTAATCCTGTGGCATCAAATCAGGCCCTTATCATGGTACCTTCGTTTTCTCATTCTGGCAATCTTAATGCTCCTGGTGCACAACATCATAATTCTCTGGAGGCTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTAGCAGTGAGGAGTTATACGGTGTTATGCCAGGGTCTCCTGCAGAATATGGCCTCACTCATTCTCTAATAAACCGGGATAACTTTCGACGACGCTATAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTCGAGCTAACACACGAGCAAATTCTTTTGCTGGAATCCAACTTGTTCCTTACTGGATTAAACTTCTACGATCAGCACAGAGAAATGCGGTTGGACATTGATAATATGTCATATGAGGAACTACTGGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTGTAACCGAGGAAGATCTATCAGAATGCTTAAAGAGAAGTTCCTTTCAATCCTCACCCTTAAACAATGCATCTAAGTGTTGCAATGAGAATAAGGATGATATCAAATGCAGCATTTGCCAGGAGGAATATGTGGCGGAGGATGAAGTGGGGAGTCTACTATGCGAACACAAGTATCACGCTGTTTGCATACAGCAGTGGTTACGGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAGTTCATCGTCGTCCAACTAA 1629 0.4359 MDEYSGKRAVDGVLVPRKGMGSMLKDTANTRDRNGQVCSRLGCSSKVNSSKGSQIGSSEKGKSLRPSFRFSSNGKETIGSSSKNFSGSSNTGKPHRKPQKTLSSHVETDSSETSSVLDEPEVSKLVAPPEKNQKGRQAEGENTESGNGMQTEVGSSSLASNTRSRRNFHPKPGLHSQEIQSTGPGTRAGTSRYGLRNLKCNSISDVIPAGCTASDSTLNKRKDAIKKRNCEGESSSTAKGKKINGPSVEGRNSVSRNGISISDSRVSRNTSNRDRPESNITSVRTRRSIGGHARGRLSGQGSANPVASNQALIMVPSFSHSGNLNAPGAQHHNSLEAPSSPSSYSGAGTSSEELYGVMPGSPAEYGLTHSLINRDNFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHREMRLDIDNMSYEELLALEERMGTVSTAVTEEDLSECLKRSSFQSSPLNNASKCCNENKDDIKCSICQEEYVAEDEVGSLLCEHKYHAVCIQQWLRLKNWCPICKASVAQSSSSSSN* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0510 542 MobiDBLite consensus disorder prediction 1 190 - -
Tpr7g0510 542 MobiDBLite consensus disorder prediction 323 350 - -
Tpr7g0510 542 MobiDBLite consensus disorder prediction 236 286 - -
Tpr7g0510 542 Pfam Ring finger domain 488 530 IPR001841 -
Tpr7g0510 542 SUPERFAMILY RING/U-box 481 535 - -
Tpr7g0510 542 MobiDBLite consensus disorder prediction 139 167 - -
Tpr7g0510 542 MobiDBLite consensus disorder prediction 104 118 - -
Tpr7g0510 542 CDD RING-H2_PA-TM-RING 489 530 - -
Tpr7g0510 542 MobiDBLite consensus disorder prediction 27 97 - -
Tpr7g0510 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 534 - -
Tpr7g0510 542 MobiDBLite consensus disorder prediction 228 304 - -
Tpr7g0510 542 Coils Coil 393 413 - -
Tpr7g0510 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 534 IPR045191 GO:0061630
Tpr7g0510 542 ProSiteProfiles Zinc finger RING-type profile. 489 530 IPR001841 -
Tpr7g0510 542 SMART ring_2 489 529 IPR001841 -
Tpr7g0510 542 MobiDBLite consensus disorder prediction 174 188 - -
Tpr7g0510 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 536 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0510 Tpr-Chr7 4316084 4320076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0510 386 530 C3H Transcription Factor Family AT2G15530 45.205 5.67e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0510 - - gmx:100819874 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0510 7 4316084 4320076 Tpr7g0510 7 4316084 4320076 ECH
Tpr1g3297 1 37367515 37369119 Tpr7g0510 7 4316084 4320076 PCT