Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0501 ATGGATTCCGAAGATGATATGCAAGATGCCAATGATATTGAGTCTCTGGATGACGATTTCTACAATAGTGAAACCGAAGATGTTCCTGTATCAAAAAAAAGAAAAACCGATGATCCCGCGGATAACTACAGCGACTATGATGATGATGATGATGATGATGATGAGTCTCGTCGAACCGAGCAAAGTTTCACTGTATTGAAAGAATCAGATATACGGCAACGTCAGGAAGATGATATCAGTAGATTAGCAGATTTTCTTTCCATATCGCATGTTGCTGCAAGCCTTCTTCTTCGTCATTATAATTGGAGTGTCAATAAGGTTAATGATGCTTGGTTCGCCGACGAAAGTAAAGTTCGAATGACAGTTGGTTTGTTGGAGAAGCCAGTTTACCAGAATCCTGCTGATGCCAATGAGCTTACTTGCGGCATCTGTTTTGATGCTTACCCTCTTTCTGAGATTGAAACGGCTTCTTGTGGTCATCCGTTCTGTTTTTCATGCTGGGGAGGATATATCAGGACTTCAATTAGCGATGGTCCGGGATGCTTGATGCTGAGATGTCCTGATCCTGCTTGTAAAGCAGCTGTTGATCAAGATATGATTAATCTTGTAGCATCTGGTGAAGATAAAGAAAAATATGATCGTTACCTTCTTAGATCATACGTTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCTAGTTGTGAACATGCTGTTAATTTCGACGGTGGACTTGGAAATTATGATGTATCTTGTCTCTGTTCGTATAGCTTTTGTTGGAATTGCACTGAGGATGCTCACCGTCCGGTGGACTGTGATACGGTGTCAAAGTGGATTCTAAAAAACAATGCAGAATCCGCAAACACCAACTGGATACTTGCTTACACAAAGCCATGTCCCGAGTGCAAAAAACCGATTGAAAAAAACCAAGGGTGCAGCCATATGACATGTAAATCACCTTGTAACTTTCAATTTTGCTGGCTATGCCTTGGTGCATGGAGAGAACATGGGGGTTCTTGCAATCGTTATGAAGCAGATAAACAAAATGAAACTGAAAAAAGAAAAGAAAGGGCAAAGAAATCAATTGAGAGGTACACACATTATTATGAGCGATGGGCTAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCTGATCTACAAAAGACGCAATCTGTTGAAATTGAGAAGCTTATACGCACACAGTGCCAACTTAAGTCGGAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTACCCGAAAATGAACATACTAAAAAGCAATTATTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCTGAACAGGAAATCCAAGTATTCCTCAGTGACAATGTCAACCCATCTAAAGAATTCAACAGTGACTATGTCACCACATCTCAAGAATTCATTGATTTTCGTAAAAAACTAACTGGATTGACCATTGTCACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGTGATGTGAATAGCAATGGAATAACTGATGATCATTGGTTTTGTGAGCAATGTACCTTTGCGAATGTCAGATCTGCCATCGCATGCCAGATGTGCAAGAAACAGCGTCCCCATTAG 1683 0.4052 MDSEDDMQDANDIESLDDDFYNSETEDVPVSKKRKTDDPADNYSDYDDDDDDDDESRRTEQSFTVLKESDIRQRQEDDISRLADFLSISHVAASLLLRHYNWSVNKVNDAWFADESKVRMTVGLLEKPVYQNPADANELTCGICFDAYPLSEIETASCGHPFCFSCWGGYIRTSISDGPGCLMLRCPDPACKAAVDQDMINLVASGEDKEKYDRYLLRSYVEDNKKTKWCPAPSCEHAVNFDGGLGNYDVSCLCSYSFCWNCTEDAHRPVDCDTVSKWILKNNAESANTNWILAYTKPCPECKKPIEKNQGCSHMTCKSPCNFQFCWLCLGAWREHGGSCNRYEADKQNETEKRKERAKKSIERYTHYYERWASNQSSRQKALADLQKTQSVEIEKLIRTQCQLKSELKFITEAWLQIVECRRVLKWTYAYGYYLPENEHTKKQLFEYLQGEAESGLERLHQCAEQEIQVFLSDNVNPSKEFNSDYVTTSQEFIDFRKKLTGLTIVTRNYFENLVRALENGLCDVNSNGITDDHWFCEQCTFANVRSAIACQMCKKQRPH* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0501 560 CDD RING-HC_RBR_TRIAD1_like 141 191 - -
Tpr7g0501 560 Pfam Ariadne domain 349 477 IPR045840 -
Tpr7g0501 560 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 533 IPR031127 GO:0004842|GO:0016567
Tpr7g0501 560 MobiDBLite consensus disorder prediction 1 62 - -
Tpr7g0501 560 ProSiteProfiles Zinc finger RING-type profile. 141 185 IPR001841 -
Tpr7g0501 560 SMART ibrneu5 210 272 IPR002867 -
Tpr7g0501 560 SMART ibrneu5 276 340 IPR002867 -
Tpr7g0501 560 Pfam IBR domain, a half RING-finger domain 210 272 IPR002867 -
Tpr7g0501 560 Pfam IBR domain, a half RING-finger domain 290 340 IPR002867 -
Tpr7g0501 560 SUPERFAMILY RING/U-box 136 222 - -
Tpr7g0501 560 SUPERFAMILY RING/U-box 291 343 - -
Tpr7g0501 560 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 20 533 - -
Tpr7g0501 560 ProSiteProfiles Zinc finger RanBP2 type profile. 531 560 IPR001876 -
Tpr7g0501 560 MobiDBLite consensus disorder prediction 1 24 - -
Tpr7g0501 560 SUPERFAMILY RING/U-box 210 279 - -
Tpr7g0501 560 ProSiteProfiles TRIAD supradomain profile. 137 344 IPR044066 -
Tpr7g0501 560 Gene3D - 268 525 - -
Tpr7g0501 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 223 IPR013083 -
Tpr7g0501 560 MobiDBLite consensus disorder prediction 25 41 - -
Tpr7g0501 560 MobiDBLite consensus disorder prediction 42 56 - -
Tpr7g0501 560 Gene3D - 529 560 - -
Tpr7g0501 560 SUPERFAMILY Ran binding protein zinc finger-like 532 558 IPR036443 -
Tpr7g0501 560 ProSitePatterns Zinc finger RanBP2-type signature. 535 554 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0501 Tpr-Chr7 4240741 4242779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0501 17 558 ARIADNE family AT1G65430 59.191 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0501 K11968 - gmx:100810427 833.943