Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0500 ATGGATTCTGAAGATGATAGGAGTATTCACGATGACAACGATATTGAGTCTCTCGATGACGATTTCTACATGGATAACTACAGTGACTATGATGAAGATGCTGCTGATGTTGCCGAAGGTGATTCTAATCCTGTTGAGTCTCGTCGAACCGAGCAAAGTTTCACTGTATTGAAAGAATCAGATATACGGCAACGTCAGGAAGATGATATCAGTAGATTAGCAGATTTTCTTTCCATATCGCATGTTGCTGCAAGCCTTCTTCTTCGTCATTATAATTGGAGTGTCAATAAGGTTAATGATGCTTGGTTTGCTGACGAAGGTGAAGTTCGAAGAACAGTTGGTTTGTTGGAGAAGCCAGTTTATGAGAATCCTGGTGATGCAGATGAGATTACTTGCGGCATCTGTTTTGATGCTTACCCTCTTTCTGAGATTGAAACGGCTTCTTGTGGTCATCCGTTCTGTTTTTCATGCTGGGGAGGATATATCGGGACTTCAATTAGCGATGGTCCGGGATGCTTGATGCTGAGATGTCCTGATCCTGCTTGTAAGGCAGCTGTTGATCAAGACATGATTAATCTTGTAGCATCTGATGAAGATAAAGAAAAGTATGATCGTTACCTTCTCAGATCATACATTGAAGACAATAAGAAAACCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTCGATGCTGGAATTCGAAAAAATTATGATGTATCTTGTCTCTGTTCGTATAGCTTTTGTTGGAATTGCACTGAGGATGCTCACCGTCCGGTGGACTGTGACACCGTGTCAAAGTGGATTCTAAAAAACAGTGCAGAATCCGAAAACACCAACTGGATACTTGCTTACACAAAGCCATGTCCCGAGTGCAAGAAACCAATTGAAAAAAACCAAGGGTGCAGCCATATGACATGTAAATCACCTTGTCACTATCAATTTTGCTGGCTATGCCTTGGTCCATGGAAAGAACATAATGGTGCTTGCAATCGTTATGAAGCAGATAAACAAAATGAAACTGAAAAAATAAAAGAAAGGGCAAAGAAATCAATTGAGAGGTACACACATTATTATGAGCGATGGGCTAGCAACCAATCTTCAAGGGAAAAAGCTCTCGCTGATCTACAAAAGATGCAATCTGTTGATATTGACAAGATTAGAGCCTCACAGGACTTACCTGAGTCACAGGTTAAGTTCATAACTGAGGCCTGGTTGCAGATAGTTGAGTGCAGGCGGGTATTGAAGTGGACATATGCATATGGATACTATTTACCCGAAAATGAACATACTAAAAAGCAATTATTTGAGTACTTACAAGGTGAGGCAGAATCAGGTTTGGAGAGACTTCATCAATGTGCTGAACAGGAAATCCAAGTATTCCTCCGTGACATTAATGTTGCCCCATCTGCAGACGATGTCCGCCCGTCTAAAGAATTCATTGATTTTCGTTCAAAACTAGCTGGACTGACCATTGTGACTAGAGACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATCTGATGTGGAGGCATTAGAGAATGGTTTCTCTGATGTGGAGGAATTGGCATTAGAGAATGGTTCATCTAATGTGGATGCATTTCAGAATGGTTTATCTGATGTGGATGACAATGGAATAATAACTGATGATCATTGGTTTTGTGAGCAATGTACCTTTGCAAATGTCGTATCTGCCACCGCATGCCGGATGTGCAATCAACAGCGTCCATGGAGTCAGGAATCATAG 1761 0.4111 MDSEDDRSIHDDNDIESLDDDFYMDNYSDYDEDAADVAEGDSNPVESRRTEQSFTVLKESDIRQRQEDDISRLADFLSISHVAASLLLRHYNWSVNKVNDAWFADEGEVRRTVGLLEKPVYENPGDADEITCGICFDAYPLSEIETASCGHPFCFSCWGGYIGTSISDGPGCLMLRCPDPACKAAVDQDMINLVASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEHAVNFDAGIRKNYDVSCLCSYSFCWNCTEDAHRPVDCDTVSKWILKNSAESENTNWILAYTKPCPECKKPIEKNQGCSHMTCKSPCHYQFCWLCLGPWKEHNGACNRYEADKQNETEKIKERAKKSIERYTHYYERWASNQSSREKALADLQKMQSVDIDKIRASQDLPESQVKFITEAWLQIVECRRVLKWTYAYGYYLPENEHTKKQLFEYLQGEAESGLERLHQCAEQEIQVFLRDINVAPSADDVRPSKEFIDFRSKLAGLTIVTRDYFENLVRALENGLSDVEALENGFSDVEELALENGSSNVDAFQNGLSDVDDNGIITDDHWFCEQCTFANVVSATACRMCNQQRPWSQES* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0500 586 SUPERFAMILY RING/U-box 127 213 - -
Tpr7g0500 586 Pfam Ariadne domain 341 465 IPR045840 -
Tpr7g0500 586 SMART ibrneu5 201 264 IPR002867 -
Tpr7g0500 586 SMART ibrneu5 277 332 IPR002867 -
Tpr7g0500 586 ProSiteProfiles Zinc finger RING-type profile. 132 176 IPR001841 -
Tpr7g0500 586 Gene3D - 260 514 - -
Tpr7g0500 586 SUPERFAMILY Ran binding protein zinc finger-like 554 580 IPR036443 -
Tpr7g0500 586 SUPERFAMILY RING/U-box 201 271 - -
Tpr7g0500 586 Gene3D - 552 586 - -
Tpr7g0500 586 ProSiteProfiles Zinc finger RanBP2 type profile. 553 582 IPR001876 -
Tpr7g0500 586 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 19 531 - -
Tpr7g0500 586 MobiDBLite consensus disorder prediction 1 51 - -
Tpr7g0500 586 MobiDBLite consensus disorder prediction 15 39 - -
Tpr7g0500 586 Pfam IBR domain, a half RING-finger domain 272 329 IPR002867 -
Tpr7g0500 586 Pfam IBR domain, a half RING-finger domain 201 264 IPR002867 -
Tpr7g0500 586 CDD RING-HC_RBR_TRIAD1_like 132 182 - -
Tpr7g0500 586 ProSitePatterns Zinc finger RanBP2-type signature. 557 576 IPR001876 -
Tpr7g0500 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 214 IPR013083 -
Tpr7g0500 586 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 19 531 IPR031127 GO:0004842|GO:0016567
Tpr7g0500 586 ProSiteProfiles TRIAD supradomain profile. 128 336 IPR044066 -
Tpr7g0500 586 SUPERFAMILY RING/U-box 283 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0500 Tpr-Chr7 4235651 4243039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0500 19 580 ARIADNE family AT1G65430 59.247 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0500 K11968 - gmx:100810427 841.262