Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0499 ATGAATAACTACAGCGCCTGTGATGATGCTGTTACTGATGAGTCTCGTCGAACCAAGCAAAGTTTTACCATATTGAAAGAATCAGATATACGGCAACGGCAGAAAGATGATATCAGTAGAGTAGCAACAGTTCTTTCCATACCTCATGTTGCTGCAAGCATCTTACTTGTTCATTATAATTGGAGCGTCTATAGGGTTAATGATGCTTGGTTTTCTGACGAATGTAAAGTTCGAAGAACAGTTGGTTTGTTGGAGAAGCCAGTTTACCAGAATCCTGCTGATGCCGAAGAGCTTACTTGCGGCATCTGTTATGAAGCTTACCCTCCTCCTAAAATTGAAACGGCTTCTTGCGGTCATCCGTTCTGTTTTTCATGCTGGAGAGGATATATTGGGACTTCAATTAGCGATGGTCCGGGATGCTTGATGCTGAGATGTCCTGATCCTGCTTGTGGTGCTGCTGTTGATCAAGATATGATTAATCTTTTAGCATCTTGTGAAGATAATGAAAAGTATGATCGTTACCTTCTCAGATCATATGTTAAAGACAATAAGAAGATCAAGTGGTGTCCTGCTCCTGGTTGTGAACATGCTGTTAATTTCGATGGCGGAACTGGTAAAAATTATGATGTATCTTGTCTCTGTTCGTATAGCTTTTGTTGGAATTGCAATGAAGAGGCTCACCGTCCTGTGGATTGTGGCACCGTGTCAAAGTGGATTATTGCAGAATCCGAAAACACAAATTGGATACTTCCTTATACAAAGCCATGTCCCAAGTGCAAGAGACCGATCGAAAAAAGCCAAGGGTGCAGCCATATGACATGTATTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGACAGAACATAATGGTCCTTGCAATCGTTATGAAGCAGCTGAACAAAATGAAACTGAAAAAAGAAGAGAAATGGCAAAGAATTCAGTGGAGAAGTACACACATTATTATGAGCGATGGGCTACCTACCACTCTTCAAGGCAAAAAGCTCTTGTTGATCTACAAAGGATGCACACTGTTTATATTGAGAAGCTTAGTGACTCACAGTGCCAAGTTAAGTCACAGCTTAAGTTCATAACTGAGGCCTGGTTACAGATAGTTGAATGCAGGCGGGTATTGAAGTGGACATATGTATATGGATACTATTTACCCGATAATCAACATGCTAAAAAGCAATTCTTTGAGTTCTTACTAGGCGAGGCAAAATCAGTTTTGGAGAGACTTCATGGATGTGCCGAAAAGGAACTCCAAGTATTCCTCAGTGACGATGTAGCCCAATCTAAAGAATTCAATGATAAGGAACTTCAAGATGTCGCCCCATCTAAAGAATTCAATGATAAGGAACTCCAAGATGTCGCCCCATCTAAAGAATTCGATGATAAGGAACTCCAAGTACTCCTCAGGGAACTCCAAGTATTCCTCAGGGACGATGTAGCCCCATCTAAAGAATTCAATGATAAGGAACTCCAAGATGTCGCCCCATCTAAAGAATTCGATGATAAGGAACTCCAAGTACTCCTCGGGGAACTCCAAGTATTCCTCAGGGACGATGTAGCCCCATCTAAAGAATTCAATGATAAGGAATTCCAAGATGTCGCCCCATCTAAAGAATTCGATGATAAGGAACTCCAAGTACTCCTCGGGGAACTCCAAGTATTCCTCAGTGACGATGTAGCCCCATCTAAAGAATTCAATGATAAGGAACTTCAAGATGTCGCCCTGTCTAAAGAATTCAATGATAAGGAACTCCAAGATGTCTCCCCATCTAAAGAATTCAATGATAAGGAACTTCAAGATGTCGCCCCATCTAAAGAATTCAATGATAAGGAACTCCAAGTATTCCTCAATGACGATGTTGCCCCATCTAAAGAATTCAACAGTGACGATGTCCGCCCGTCTAAAGAATTCATTGTTTTTCGTACAAAACTAGTTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTTGGGCATTAGAGAATGGTTTATGTGATGTGGATGGCTACGGAATAACTGATGATCATTGGTTTTGTGAGCAATGTACCTTTGCAAATGTCATATCTGCCACCGGATGCCGGATGTGCAATCAACAGCGTCCACGGAAACTCAACCTCTCTTTACCCAGACAGTCGCAATGTTTTCTTCCCTGA 2184 0.4148 MNNYSACDDAVTDESRRTKQSFTILKESDIRQRQKDDISRVATVLSIPHVAASILLVHYNWSVYRVNDAWFSDECKVRRTVGLLEKPVYQNPADAEELTCGICYEAYPPPKIETASCGHPFCFSCWRGYIGTSISDGPGCLMLRCPDPACGAAVDQDMINLLASCEDNEKYDRYLLRSYVKDNKKIKWCPAPGCEHAVNFDGGTGKNYDVSCLCSYSFCWNCNEEAHRPVDCGTVSKWIIAESENTNWILPYTKPCPKCKRPIEKSQGCSHMTCIPPCKFEFCWLCLGAWTEHNGPCNRYEAAEQNETEKRREMAKNSVEKYTHYYERWATYHSSRQKALVDLQRMHTVYIEKLSDSQCQVKSQLKFITEAWLQIVECRRVLKWTYVYGYYLPDNQHAKKQFFEFLLGEAKSVLERLHGCAEKELQVFLSDDVAQSKEFNDKELQDVAPSKEFNDKELQDVAPSKEFDDKELQVLLRELQVFLRDDVAPSKEFNDKELQDVAPSKEFDDKELQVLLGELQVFLRDDVAPSKEFNDKEFQDVAPSKEFDDKELQVLLGELQVFLSDDVAPSKEFNDKELQDVALSKEFNDKELQDVSPSKEFNDKELQDVAPSKEFNDKELQVFLNDDVAPSKEFNSDDVRPSKEFIVFRTKLVGLTSVTRNYFENLVWALENGLCDVDGYGITDDHWFCEQCTFANVISATGCRMCNQQRPRKLNLSLPRQSQCFLP* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0499 727 ProSitePatterns Zinc finger RanBP2-type signature. 687 706 IPR001876 -
Tpr7g0499 727 ProSiteProfiles Zinc finger RING-type profile. 100 144 IPR001841 -
Tpr7g0499 727 ProSiteProfiles TRIAD supradomain profile. 96 301 IPR044066 -
Tpr7g0499 727 Gene3D - 228 468 - -
Tpr7g0499 727 ProSiteProfiles Zinc finger RanBP2 type profile. 683 712 IPR001876 -
Tpr7g0499 727 Pfam Ariadne domain 306 396 IPR045840 -
Tpr7g0499 727 SUPERFAMILY Ran binding protein zinc finger-like 684 710 IPR036443 -
Tpr7g0499 727 Gene3D - 681 724 - -
Tpr7g0499 727 SUPERFAMILY RING/U-box 95 178 - -
Tpr7g0499 727 SMART ibrneu5 169 232 IPR002867 -
Tpr7g0499 727 SMART ibrneu5 236 297 IPR002867 -
Tpr7g0499 727 Pfam IBR domain, a half RING-finger domain 169 232 IPR002867 -
Tpr7g0499 727 Pfam IBR domain, a half RING-finger domain 251 294 IPR002867 -
Tpr7g0499 727 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 7 438 - -
Tpr7g0499 727 SUPERFAMILY RING/U-box 248 299 - -
Tpr7g0499 727 CDD RING-HC_RBR_TRIAD1_like 100 150 - -
Tpr7g0499 727 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 438 IPR031127 GO:0004842|GO:0016567
Tpr7g0499 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 184 IPR013083 -
Tpr7g0499 727 SUPERFAMILY RING/U-box 169 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0499 Tpr-Chr7 4226936 4232314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0499 641 710 ARIADNE family AT1G65430 45.745 1.03e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0499 K11968 - gmx:100810427 714.916