Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0428 ATGCGGGATTTTTCGTTATGCCTTCGAAGCACTGTAGATCGCTGTGAGGCCATGAGAGCTGGACGACGTGGCCATCTCAGGGTTGAGGATTTATCCGCGAACTCTCCACAATCAAATCCTGGAAGGGATTCATGGCGATTCAAAGTTCGTGTTCTTCGTTTATGGAGTGTGTCCGCGTTTTTGAGACCAGATCAAGTGAATTCGCTTGAGATGGTGTTAATTGATGAAAAGGGGGCCAAGATTCATGCATCCATTCGTCGTCAGTTGTTGTATCTGTTTAATGGCAAAATTGTTGAGGGTAGTGTTTATAAGATGTCATTTTTCGTTGTTTACCCAGAGTCTGGTTTGTATCGGACAACTTCTCATAGATACAAGCTTAGCTTTGAGATGAAAACAAAAGTTCAGATCTGTGAAAGTGGTGTGATAGATCGATATGGATTATCTCTTACTTCTATTGGAGACATTTGTGCTTATGGACCTGATCATGATTTTTTAGTTGATGTTGTTGCTTTAATTACTGGTATTTCACCTGAGAAGGAATATGTTCGTGATGGAAAGGTCACTAAGATGGTGGTGATTGAGTTGTCTGATAATAGTGGAAAGTGTGAGTGTGCTTTGTTTGGTGGTTATGTGCAAGAGCTTCAAGAGATGCTTGCAAAATGTGCTGATGGATTGCCAATTGTTGTTGTTCAATTTGCCAAGATAAAGATGTTTGGAGGGAAAGTGTCAATTCAAAATGTATTGAATGCTACTAGGATTTATGTTAATCCCCCAATACCAGAGGTTGTTTCTTTCAAACAAGTTATGCCTCTTGAAGGTGTTGAATCTTGTGTTTCCATACCTGCTATTGGGGAACGTGTGAAGCCATCTTTTGAAGAAGATTTTTTGTTAAATTATCCAAAGACTTCCATAGCTCATTTACTTGAATTGGCCGAAGATGGTATCTATGTTGTGAGTGGTGTTGTTGGTGGTTTGCTTGAAGGTGAAGATTGGTGGTATGCATCCTGTAAGTGCCACAAGGGACTTTCTGCTGATTCAGGGGCTTATTATTGCAAAAAATGTGATAAACATGTTTTCAAAATGGTTCCAAGGTTTAGGGTTAAGCTTGTGGTTAATGATGGAACTGCTGAAGGAGTGTTTGTTGTTTTTGATGGTGATATGAGTTCATTGGTTGGAAAATGTTGCCCTGATTTGGTTGCTGCAGCTAAGGCTAGAAATCGTGATTATTGTCCTCCTGAATTAGACTTGCTGAAAGGGAAGAGGTTGCTGTTCAAGGTTGAGAAAGTTTCCTATGGAGTTCCAAGGTTTGATGGTTCATTTAGAGTTAAGAGAATATGCAGTAATTTGTCTATTGTGAAGGCCTTTGATGCATCTATGGCTGAAGATGATTCTGGTGAACATGGTTATGATTTGGAAGTAGATTATGTTGATAATACCCCTGTGGAGGATGTTGTGGGAAATCTCATTGTTTCCCCAACTGATGTTAAAGTTAAACATGGAATTGATCTTTCAACTGCTCAATTGGTGCCTGAGATCATAAATTTGGATGATAATTCTGATAATGGATTTGAAGTTTTCCTGGGTGAACGTGTTGGTGTGGATGTGAGCAAGGTTTTGGCTGCTAAGAGAAATTTGTCTGATGCTTTTGCTGGATGTGATGATGATGAAGCCAGTTCTTCTAAGCGTATCAAATACTCTCCTCAATGA 1707 0.396 MRDFSLCLRSTVDRCEAMRAGRRGHLRVEDLSANSPQSNPGRDSWRFKVRVLRLWSVSAFLRPDQVNSLEMVLIDEKGAKIHASIRRQLLYLFNGKIVEGSVYKMSFFVVYPESGLYRTTSHRYKLSFEMKTKVQICESGVIDRYGLSLTSIGDICAYGPDHDFLVDVVALITGISPEKEYVRDGKVTKMVVIELSDNSGKCECALFGGYVQELQEMLAKCADGLPIVVVQFAKIKMFGGKVSIQNVLNATRIYVNPPIPEVVSFKQVMPLEGVESCVSIPAIGERVKPSFEEDFLLNYPKTSIAHLLELAEDGIYVVSGVVGGLLEGEDWWYASCKCHKGLSADSGAYYCKKCDKHVFKMVPRFRVKLVVNDGTAEGVFVVFDGDMSSLVGKCCPDLVAAAKARNRDYCPPELDLLKGKRLLFKVEKVSYGVPRFDGSFRVKRICSNLSIVKAFDASMAEDDSGEHGYDLEVDYVDNTPVEDVVGNLIVSPTDVKVKHGIDLSTAQLVPEIINLDDNSDNGFEVFLGERVGVDVSKVLAAKRNLSDAFAGCDDDEASSSKRIKYSPQ* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0428 568 Gene3D - 301 450 IPR012340 -
Tpr7g0428 568 CDD RPA1_DBD_A_like 48 134 - -
Tpr7g0428 568 Pfam Domain of unknown function DUF223 70 138 IPR003871 -
Tpr7g0428 568 CDD RPA1_DBD_B_like 167 270 - -
Tpr7g0428 568 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 49 399 - -
Tpr7g0428 568 CDD RPA1_DBD_C 326 426 IPR013955 -
Tpr7g0428 568 SUPERFAMILY Nucleic acid-binding proteins 147 273 IPR012340 -
Tpr7g0428 568 SUPERFAMILY Nucleic acid-binding proteins 39 139 IPR012340 -
Tpr7g0428 568 PANTHER REPLICATION FACTOR A 1, RFA1 49 399 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g0428 568 SUPERFAMILY Nucleic acid-binding proteins 316 447 IPR012340 -
Tpr7g0428 568 Gene3D - 37 137 IPR012340 -
Tpr7g0428 568 Gene3D - 142 275 IPR012340 -
Tpr7g0428 568 Pfam Replication factor-A C terminal domain 326 407 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0428 Tpr-Chr7 3550652 3553664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0428 39 398 Core DNA Replication Machinery Family AT5G45400 23.016 6.12e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0428 - - mtr:MTR_8g062030 454.907