Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0423 ATGTTTAGTACTAATCATTTTCTAATACTAATTATGGTTCTTTCATTAGTCTTAATCACTCAAAGCCAAGAAAACAGAGAAAAACAACAGAACATGGCAGACTTACCACAAGGTGTGACTCCAAGTAAAGGTGTTGTAATAATTGTTCTTTCCATAATGTTTCTCATAACATTTATCTTACTTGTTTATGTTAAATTCTGTCGTGTTACGCCTCTTCATCTTCTAAATCATCACCCTCTTCATCTTCAAGACAATCATGCACAATCTCAATCAAGGTCTATAGTTTCTGGTGTTGAAAAAAATGTAATTGAAACACTTCCTTTCTTTAAATTTTCTTCTTTAAAGGGTTCTAAACAAGGACTAGAATGTACCGTTTGTTTGTCGAAATTCGAAGATGAAGAGATTCTTAGATTGTTGCCGAAATGCAAACACGCGTTTCATATGAATTGTATTGATAAGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGTAGGTATATGGTTGAAGAAAATGATATAAAAAACTTCACTTTTTCATTCAGCTCAAGATTCTTAAGAGTCCCTTCAAATTTAGGTGAAGACCCTAATCTTGAAATCTTTATTCAACGAGAACCGTCACAAAGAAGAACAAACAAAGAAGAACAAGAACTGGTTTTTCTTGATCATGAAGAAGGTGGTAGCAGTAATAAGGTTACAAAGTGGACACAACATCAACAACAAAATTTGCATATGATTAATCATAAAATATTAATCTCTGATGCAGTTACGAGGAGTCGGTGGAGTGATCTTAATTCTTCAGATTTGTTATCATTGAGCAGTGAGATGCTTCATGATGTATCAAGTGCGAGATTTGATCCTAATGATGAGGATGAAAATTCATTTACAGCATTGAATCCTGGTGAGAAAAGGTCTATGTCTGAGATTGCAAATGTTCCAAGGTTTGTGGAAATCAACAGAAGGAATGGTAATGGAGAGAATGGAAATGATGAGAGGTTATGGAGGATTTGGTTGCCAATTGCAAGAAGAACAGTTCAATGGTTTGCAAGACAAGAAACAAATTCAGTTCAATCACAACATAAACATTTAGCTTCAAATGTTTGA 1101 0.3406 MFSTNHFLILIMVLSLVLITQSQENREKQQNMADLPQGVTPSKGVVIIVLSIMFLITFILLVYVKFCRVTPLHLLNHHPLHLQDNHAQSQSRSIVSGVEKNVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRYMVEENDIKNFTFSFSSRFLRVPSNLGEDPNLEIFIQREPSQRRTNKEEQELVFLDHEEGGSSNKVTKWTQHQQQNLHMINHKILISDAVTRSRWSDLNSSDLLSLSSEMLHDVSSARFDPNDEDENSFTALNPGEKRSMSEIANVPRFVEINRRNGNGENGNDERLWRIWLPIARRTVQWFARQETNSVQSQHKHLASNV* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0423 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 175 IPR013083 -
Tpr7g0423 366 SMART ring_2 123 164 IPR001841 -
Tpr7g0423 366 CDD RING-H2_EL5_like 122 165 - -
Tpr7g0423 366 Pfam Ring finger domain 122 165 IPR001841 -
Tpr7g0423 366 PANTHER RING-H2 FINGER PROTEIN ATL4J 16 287 - -
Tpr7g0423 366 PANTHER RING-H2 FINGER PROTEIN ATL4J 288 361 - -
Tpr7g0423 366 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Tpr7g0423 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 287 - -
Tpr7g0423 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 288 361 - -
Tpr7g0423 366 SUPERFAMILY RING/U-box 105 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0423 Tpr-Chr7 3512633 3514400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0423 41 362 C3H Transcription Factor Family AT2G20030 39.510 9.13e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0423 K10664 - gmx:100816668 372.474