Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0409 ATGGCCAAAGTTTGTAAGAAGTTTGATTGTGTTTCTGAGATTTTACCAAACAAGGATTGTGTTCGAATCAAGGTGCGTGTTCTTCGTATCTGGAAGACGTCTTCCTTCCTCAATCCTTCTGATGTCAATTCAATTGAGATGGTTTTGGTTGATGAAAAGGGTGGAAAGATTCATGCCTCTGTTAGGAAGCAGTTTTTGTATATGTTTGAGTCTAAAATTGAAGAAGGACAAGTGTATCAGATGTCCTATTTTTCCGTTGTTCCTCAGACTGGTTTCTACAGAACTACTCTACATCCATACAAGCTATTATTCCAAATTAAGACAAAGGTTGTAGCTGTTAAGAGTTCTGATATATCTCATCATGGTCTCACATTGACAAGTTTGGCTGAAGTTTGTAGTCATGTCCATGATTATGAATTTTTAGTTGATGTGATGGGTTTGTTATCTGGGATTTCTGCTGAGAGGGAATATGTGAGGGATGGAAATGTTACAAAGATGGTTGTGATAGAGTTGACTGATGCTAGTGGGAAATGTGAATGTGCTTTGTTTGGGGATTATGTTGATGAGTTAAACAAGAAACTGGGCAAGACATCTGGAGGTCTCCCTGTGGTTGTAATTCAGTTTGCAAAGGTTAAGATATTTAGAGACCAAGCATCCATTCAAAATGTCATCAATACTACAAAGATATTTGTGAATCCTGATATCCCTGAAGCTGATGCATTTAAGGATAGGTTTGCTTAG 741 0.3765 MAKVCKKFDCVSEILPNKDCVRIKVRVLRIWKTSSFLNPSDVNSIEMVLVDEKGGKIHASVRKQFLYMFESKIEEGQVYQMSYFSVVPQTGFYRTTLHPYKLLFQIKTKVVAVKSSDISHHGLTLTSLAEVCSHVHDYEFLVDVMGLLSGISAEREYVRDGNVTKMVVIELTDASGKCECALFGDYVDELNKKLGKTSGGLPVVVIQFAKVKIFRDQASIQNVINTTKIFVNPDIPEADAFKDRFA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0409 246 CDD RPA1_DBD_B_like 143 245 - -
Tpr7g0409 246 Pfam Domain of unknown function DUF223 46 116 IPR003871 -
Tpr7g0409 246 SUPERFAMILY Nucleic acid-binding proteins 125 245 IPR012340 -
Tpr7g0409 246 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Tpr7g0409 246 Gene3D - 6 112 IPR012340 -
Tpr7g0409 246 PANTHER REPLICATION FACTOR A 1, RFA1 20 241 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr7g0409 246 Gene3D - 116 246 IPR012340 -
Tpr7g0409 246 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 241 - -
Tpr7g0409 246 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0409 Tpr-Chr7 3379374 3380616 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0409 11 245 Core DNA Replication Machinery Family AT4G19130 23.140 1.97e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0409 - - mtr:MTR_1g075850 289.271