Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0340 ATGAACTTGGTTAATCTTTTCATGTTTTTTATGTTGCAATTCATCTTGTTTCTAGGTTGTAGTAGCATTGATTCAGGGGTGCGATTGGATATTCAAGAAAAACATGTGATAATGGATAATGGCATAGTACAAGTGAATTTATCAAACCCAGAAGGATTTGTCATTGGAATTCAATATAATGGACTTGATAATTTGCTTGAAGTTCTTAATCCCGAATTTGACAGAGGGTATTGGGATATTGTATGGGACCAAGGTGGAAAAAATAGAACAAAAAAAGGTGCAAAGGGAAAGGGTAGACTCGACAGGATGGACACCACAAATTTGACGGTGATAGTGAAAAATGAAGAACAAGTAGAATTATCTTTCACTAGAACATGGAATTTCTCTCTTGAAGGAAAGCTAGCACCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCCTCTGGATTTTATACATATGCAATTTATGACCATTTGAAGGAATGGCCTGCATTTGATCTTGACAATACTAGAGTTGCATTCAAACCTAGGAAAGACAAGTTCAATTACATGGTTATAGCGGACGACAGACAAAGATTTATGCCGCTGCCTGATGATCGATTACCGGGAAGAGGCCAAGTTTTGGCATATCCGGAGGCTGTCCGCCTTGTCGATCCAGTTGAGCCGGAGTTTAAAGGAGAGGTGGATGATAAATATGAGTACTCAATTGAGAGTCGAAGCAACTATGTTCATGGTTGGATTTTCATTAATTCATCGGAATCTAATGGAATATGGTTAATTACGCCAAGTTATGAGTTTAGATCTGCTGGACCCTTAAAACAATATCTTGCTTCCCATGCGGGGCCAACCATGCTCTCCGTATTTCATAGCACACATTATTCAGGAGAAGATCTGATAATGAAATTTGGACCCAATGAATCGTGGAAGAAAGTTTTTGGGCCTATATTCATATACCTTAATTCCATGTCTGATGGGCTTAGCCCAATCAGGCTTTGGGAGGACGCCAAACATCAGATGGTGAATGAAATTGAAAGCTGGCCATATACATTTCCTGCTTCAAAGGACTTTCTCTCATCTGCCCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGTGATAGGTACATCAGTGATGCATTCGTCCCAGTGAGTGGTGCTTATGTTGGATTAGCACCCCTAGGAGATGTTGGATCTTGGCAAAGAGAATACAAGGGTTATCAATTTTGGACCATTACTGATGATGAAGGCTATTTCTCAATAATTAACATACGTCCTGGTGACTATAATCTTTATTCATGGGTCACTGGATTCATTGGTGATTATCAATATAACAATGCCATTAACATAACCTCAGGTTGTAATATTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATCGGCATTCCTGATCGCACAGCTGCCGAGTTCTATGTTCCTGATCCAAATCCCTTGTACGTTAACAAACTTTATGTCAACCATACAGACAGATATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAATGAAGACTTAGTTTACACTGTTGGCATTAGTGATTACAAAAAAGACTGGTTTTTTGCTCAAGTTACTAGGAAAAAGGACAACAATACTTACCAAGGAACTACATGGCAAATTAATTTCAATCTTAATCATGTGAATACCAATGGAACCTACAAATTGCGACTAGCTCTAGCATCTGTACATTCTGCTGATTTACAGATTCGGATAAACAATTCAAATGCAACAAGTCCACCTTTATTTTCAAGTGGAATTATTGGAAAGGAGAATACTATAGCTAGACATGGAATTCATGGATTCTACTGGTTATTCAACATTGATGTAGAAGGCACTATTCTTGTGAAAGGAAACAATACAATCTTTCTAACACAAGCTAACAACAATGGTCCTTTTGTAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCCCCTGATATTAATTTTATTAAAGATCGAAACTAG 2025 0.3802 MNLVNLFMFFMLQFILFLGCSSIDSGVRLDIQEKHVIMDNGIVQVNLSNPEGFVIGIQYNGLDNLLEVLNPEFDRGYWDIVWDQGGKNRTKKGAKGKGRLDRMDTTNLTVIVKNEEQVELSFTRTWNFSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKPRKDKFNYMVIADDRQRFMPLPDDRLPGRGQVLAYPEAVRLVDPVEPEFKGEVDDKYEYSIESRSNYVHGWIFINSSESNGIWLITPSYEFRSAGPLKQYLASHAGPTMLSVFHSTHYSGEDLIMKFGPNESWKKVFGPIFIYLNSMSDGLSPIRLWEDAKHQMVNEIESWPYTFPASKDFLSSAQRGKVEGRLLVRDRYISDAFVPVSGAYVGLAPLGDVGSWQREYKGYQFWTITDDEGYFSIINIRPGDYNLYSWVTGFIGDYQYNNAINITSGCNINVGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPLYVNKLYVNHTDRYRQYGLWERYADLYPNEDLVYTVGISDYKKDWFFAQVTRKKDNNTYQGTTWQINFNLNHVNTNGTYKLRLALASVHSADLQIRINNSNATSPPLFSSGIIGKENTIARHGIHGFYWLFNIDVEGTILVKGNNTIFLTQANNNGPFVGILYDYIRLEGPPDINFIKDRN* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0340 674 Pfam Rhamnogalacturonate lyase family 26 230 IPR010325 -
Tpr7g0340 674 SUPERFAMILY Galactose-binding domain-like 469 662 IPR008979 -
Tpr7g0340 674 Pfam Polysaccharide lyase family 4, domain III 472 661 IPR029411 -
Tpr7g0340 674 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 663 - -
Tpr7g0340 674 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
Tpr7g0340 674 Gene3D - 360 459 - -
Tpr7g0340 674 SUPERFAMILY Starch-binding domain-like 361 460 IPR013784 GO:0030246
Tpr7g0340 674 CDD RGL4_C 474 662 - -
Tpr7g0340 674 CDD RGL4_M 363 462 IPR029413 -
Tpr7g0340 674 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 663 - -
Tpr7g0340 674 CDD RGL4_N 35 323 - -
Tpr7g0340 674 Gene3D - 470 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0340 Tpr-Chr7 2728697 2733614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0340 25 664 Polysaccharide Lyase AT1G09890 63.297 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0340 K18195 - gmx:100786488 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0340 7 2728697 2733614 Tpr7g0340 7 2728697 2733614 ECH