Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0339 ATGCCGCCGCTAGGGGTGCAACTCAACATTCAAGATCATCATGTGGTGATGGACAATGGCATACTCAAAGTCACTTTATCAAATCCTGAGGGAATTGTCACTGGAATAGAGTATAATGGCATTGACAACTTGCTTGAAGTGTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGAATATTTGATGTGATAAAGGGGAGCACATTCAAAGTTATATTGGAAGATGAGGATCAAGTTGAGATATCCTTCACCAGGAATTGGGATGCCTCCATGGAGGGCAAGATGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCATCCGGCTTCTACTCATATGCAATTTATGAACACTTGGAGGACTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCATTATATGGCAATGGCAGATAATAGACAGAGGAATATGCCTCTTCCGGATGACAGAATACCACCAAGAGGCCAAGCACTTGCCTATCCAGAAGCAGTTCTACTTGTCAATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTATCAATATTCATGTGATAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCAGTTGGATTCTGGCTTATTACACCTAGCAATGAATTTCGTTCGGGTGGACCCGTCAAACAAAACTTAACTTCCCACGTGGGACCTACCACGCTTGCCGTTTTTCTCAGTGCTCATTATAGTGGAGAAGATTTAGTGCCTAAGTTCAAAACCGGTGAGGCATGGAAAAAAGTTTTTGGTCCAGTTTTTATCTATGTCAATTCTCCATATTATGGTGCTGATCCAATTAAGCTATGGGATGACGCTAAACTTCAGATGTTAATGGAAGTTCAAAGTTGGCCCTACAGTTTTCCCGAATCAGATGATTTCCCGAAATGGGATGAACGTGGTAATGTTAGTGGCAGACTATTGGTTAAAGAGAGGTATATAGATGATGACGACTACTTATCAGCAAAATGTGCTTATATTGGCTTGGCTACACCAGGAGATGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGACGCAAGCAGACGATGATGGTTATTTCTCCATCAGCAATGTACGTGCCGGCGACTATAATGTTTATGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTACTGATTAGCATAACAGAAGGTTGTGACATAGATATCGGTGATCTTGTTTATGAGCCACCAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCCGAATTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTTTATGTTAATCATCCTGACAAATTTAGGCAATATGGGATATGGGAGAGATATGCAGAACTATACCCTGACAAAGATTTGGTCTACACAATTGGTGTTAGTGACTACACAAAAGATTGGTTCTATGCTCAAGTTACTAGGAAGAAAGATGATAATACATATCAAGGAACAACTTGGCAAATCAAGTTTAAGCTTGATAATGTGAACAAAAAAAGTATCTATAAACTTCGAGTTGCTTTGGCATCAGCTACATATTCAGAACTTCAGGTACGAGTAAATGATCCCAAAGCAAATCGTCCTTTATTTTCAAGTGGATTGATAGGAAAGGATAATTCAATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTACAATGTGAATATACCTGGTAATTTACTTGTTGAAGGAGATAATAATACCATCTTTTTGACACAATCAAGAGGCAATGGTCCATTTCAAGCCATTATGTATGATTATATTCGTTTGGAAGCTCCACCAACTACTTCTAGTTTCAATAACAAAATTTGA 1941 0.391 MPPLGVQLNIQDHHVVMDNGILKVTLSNPEGIVTGIEYNGIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGIFDVIKGSTFKVILEDEDQVEISFTRNWDASMEGKMVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRIPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKTGEAWKKVFGPVFIYVNSPYYGADPIKLWDDAKLQMLMEVQSWPYSFPESDDFPKWDERGNVSGRLLVKERYIDDDDYLSAKCAYIGLATPGDVGSWQRECKNYQFWTQADDDGYFSISNVRAGDYNVYAWVPGFIGDYKYDVLISITEGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGIWERYAELYPDKDLVYTIGVSDYTKDWFYAQVTRKKDDNTYQGTTWQIKFKLDNVNKKSIYKLRVALASATYSELQVRVNDPKANRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGNLLVEGDNNTIFLTQSRGNGPFQAIMYDYIRLEAPPTTSSFNNKI* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0339 646 Gene3D - 4 306 IPR014718 GO:0030246
Tpr7g0339 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 639 - -
Tpr7g0339 646 Pfam Polysaccharide lyase family 4, domain II 359 430 IPR029413 -
Tpr7g0339 646 CDD RGL4_C 446 634 - -
Tpr7g0339 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 639 - -
Tpr7g0339 646 CDD RGL4_M 334 434 IPR029413 -
Tpr7g0339 646 Gene3D - 442 634 - -
Tpr7g0339 646 SUPERFAMILY Galactose mutarotase-like 12 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tpr7g0339 646 Pfam Rhamnogalacturonate lyase family 9 203 IPR010325 -
Tpr7g0339 646 SUPERFAMILY Galactose-binding domain-like 441 634 IPR008979 -
Tpr7g0339 646 Pfam Polysaccharide lyase family 4, domain III 444 633 IPR029411 -
Tpr7g0339 646 Gene3D - 333 428 - -
Tpr7g0339 646 SUPERFAMILY Starch-binding domain-like 373 429 IPR013784 GO:0030246
Tpr7g0339 646 CDD RGL4_N 14 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0339 Tpr-Chr7 2721061 2725844 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0339 1 636 Polysaccharide Lyase AT1G09890 71.630 0.0 955
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0339 K18195 - gmx:100814721 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0339 7 2721061 2725844 Tpr7g0339 7 2721061 2725844 ECH