Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g0338 ATGATTTCTCGATTTCTTGCTCATAGAAAGAAAAAGAAAGAGGAAAGATTCACCATGTCCGCTCCAGGTGTACAGTTACACATCCAACAACACCATGTGGTGATGGATAATGGCATAGTCCAAGTTACATTATCAAATCCAGGTGGAATTGTCACCGGAATCCGATATAATGGCGTTGACAATTTGCTTGAAATTCTCAATAAGGAGACTAATAGAGGGTATTGGGATCTTGTTTGGAGTGCACCAGGAGTCAAAGGATATTTTGATGTGATTAATGGAACATGTTTTGAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCAAGAGAATGTGGGATCATTCTCTTGAGGGAAAGTTTGTCCCCTTAAACATTGACAAAAGATTCATTCTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACACGGATGGCCAGATTTTGATATGAGTGCGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAGTACATGGCTATGGCAGACGATAGGCGAAGGATTATGCCTTTTCCGGAGGATCGATTACCAGGAAGATGCCAACCCTTGGCCTACCAAGAAGCGGTCCTACTAGTCAATCCTAAGAATCCACAATTGAAAGGAGAGGTGGATGACAAGTATCAATATTCATGTAAGAACATAGACAATCGAGTCCACGGGTGGATATCTTTCAACCCACCTGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCTTCAAGCAGAATTTGACCTCGCATGTAGGACCGACCACACTTGCCATGTTTCTTAGTGGTCACTATGCCGGACAAGATTTGGTACCCAAAATCAGAGGTGGTGAACCGTGGAAGAAGGTTTTTGGTCCTGTATATATTTATCTCAATTCTGGACCAACTGGTGATGACCCACTCTTTTTATGGGAGGATGCAAAAATAAAGATGATGAATGAAGTTCAAAGTTGGCCATATTTATTCCCCGCTTCTGAGGATTTTTTAAAACCACATCAACGAGGCAACGTCAGTGGCAGATTACTTGTCTTAGACAGGTACATCAGCACTGATTTAATATCAGCAAATGGCGCTTATGTTGGTCTGGCTCCACCGGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGTGAATGGATTTTTTACGATTAGCAATGTACGTCCAGGTGACTACAACCTTTTTGCCTGGGTACCTGGTTTTGTTGGAGACTACAGATTTGGTGATTCTGTGAAGATAACCTCAGGTTCTTGCATTGAATTGGGGGAAATTGTATTTGAACCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGGTGCAGAATTTTATGCTCCTGATCCCAATCCACAGTATATAAATAAGGTTCTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGAAAGATATTCAGAGTTATATCCGGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTACGCTCAGGTTCCCAGAAAAAAAGTGGATAACACTCATGAAGGAACAACTTGGCAAATCAAGTTTGAACTCGGTGGTGTTATTCAAGGAACTGTATATAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTCAATGACCCCAATGCAAGGCGTCCTGTATTTACCACCGGATTAATAGGAAGGGAAAACACAGTTGCAAGACTAGGAATTCATGGACTCTATTGGCTGTACCATGTGAATATATCAAGTTCTCTTTTTATTGATGGCACAAATACTATATATTTTACACAGCCAAGATGCACCAGTCCTTTCCAGGGTTTCATGTATGACTATATTCGTTTGGAAGGCCCACCTTGTTCTTAA 1956 0.4172 MISRFLAHRKKKKEERFTMSAPGVQLHIQQHHVVMDNGIVQVTLSNPGGIVTGIRYNGVDNLLEILNKETNRGYWDLVWSAPGVKGYFDVINGTCFEVIVQNEEQVELSFKRMWDHSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLHGWPDFDMSARITFKLRKDKFQYMAMADDRRRIMPFPEDRLPGRCQPLAYQEAVLLVNPKNPQLKGEVDDKYQYSCKNIDNRVHGWISFNPPVGFWQITPSDEFRSGGPFKQNLTSHVGPTTLAMFLSGHYAGQDLVPKIRGGEPWKKVFGPVYIYLNSGPTGDDPLFLWEDAKIKMMNEVQSWPYLFPASEDFLKPHQRGNVSGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADVNGFFTISNVRPGDYNLFAWVPGFVGDYRFGDSVKITSGSCIELGEIVFEPPRDGPTLWEIGIPDRSGAEFYAPDPNPQYINKVLINHPDRFRQYGLWERYSELYPDADLVYTIGVSDYRKDWFYAQVPRKKVDNTHEGTTWQIKFELGGVIQGTVYKLRVAIASATLAELQIRVNDPNARRPVFTTGLIGRENTVARLGIHGLYWLYHVNISSSLFIDGTNTIYFTQPRCTSPFQGFMYDYIRLEGPPCS* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g0338 651 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 7 650 - -
Tpr7g0338 651 SUPERFAMILY Galactose mutarotase-like 214 312 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tpr7g0338 651 CDD RGL4_N 32 314 - -
Tpr7g0338 651 Pfam Polysaccharide lyase family 4, domain II 371 443 IPR029413 -
Tpr7g0338 651 Gene3D - 23 321 IPR014718 GO:0030246
Tpr7g0338 651 SUPERFAMILY Starch-binding domain-like 347 445 IPR013784 GO:0030246
Tpr7g0338 651 Pfam Rhamnogalacturonate lyase family 23 217 IPR010325 -
Tpr7g0338 651 CDD RGL4_M 348 447 IPR029413 -
Tpr7g0338 651 Pfam Polysaccharide lyase family 4, domain III 457 645 IPR029411 -
Tpr7g0338 651 Gene3D - 455 646 - -
Tpr7g0338 651 SUPERFAMILY Galactose-binding domain-like 454 646 IPR008979 -
Tpr7g0338 651 CDD RGL4_C 459 646 - -
Tpr7g0338 651 Gene3D - 346 443 - -
Tpr7g0338 651 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 7 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g0338 Tpr-Chr7 2714634 2720191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g0338 19 649 Polysaccharide Lyase AT1G09910 69.778 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr7g0338 K18195 - gmx:100814185 1180.24